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@@ -11,18 +11,19 @@ Accompanying data available on [Zenodo](https://zenodo.org/doi/10.5281/zenodo.81
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To generate depth and orientation fields, please refer to the documentation of the following repositories:
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* [regiodesics](https://github.com/BlueBrain/regiodesics)
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* [atlas-direction-vectors](https://github.com/BlueBrain/atlas-direction-vectors)
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* [atlas-placement-hints](https://github.com/BlueBrain/atlas-placement-hints/)
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## Flatmapping
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Complete workflow to generate flatmaps and perform flatmap-based applications. For more details, please look at the [README](flatmap/README.md) in `flatmap`.
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Complete workflow to generate flatmaps and perform flatmap-based applications. For more details, please look at the [README](flatmap/README.md) under `flatmap`.
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## Annotation of barrels and barrel columns
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Code needed to add barrel cortex annotations to the CCFv3 Allen Atlas at 10 $\mu m$ resolution. For more details, please look at the [README](barrel-annotations/README.md) in `barrel-annotations`.
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Code needed to add barrel cortex annotations to the CCFv3 Allen Atlas at 10 $\mu m$ resolution. For more details, please look at the [README](barrel-annotations/README.md) under `barrel-annotations`.
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## Citation
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> Bolaños-Puchet S., Teska A., et al. (2024). Enhancement of brain atlases with laminar coordinate systems: Flatmaps and barrel column annotations. bioRxiv. DOI: 10.1101/2023.08.24.554204
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## Funding & Acknowledgment
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## Funding & Acknowledgments
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This project/research was supported by funding to the Blue Brain Project, a research center of the École polytechnique fédérale de Lausanne (EPFL), from the Swiss government’s ETH Board of the Swiss Federal Institutes of Technology.
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