repos:
  #####
  # Basic file cleanliness
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v6.0.0
    hooks:
      - id: check-added-large-files
      - id: check-yaml
      - id: check-toml
      - id: end-of-file-fixer
      - id: mixed-line-ending
      - id: trailing-whitespace
  #####
  # Python
  - repo: https://github.com/astral-sh/ruff-pre-commit
    rev: v0.12.11
    hooks:
      # Sort imports
      - id: ruff-check
        # Run the formatter
      - id: ruff-format
  - repo: https://github.com/astral-sh/uv-pre-commit
    rev: 0.8.14
    hooks:
      - id: uv-lock
  #####
  # R
  - repo: https://github.com/lorenzwalthert/precommit
    rev: v0.4.3.9014
    hooks:
      - id: lintr
  #####
  # Bash
  - repo: https://github.com/scop/pre-commit-shfmt
    rev: v3.12.0-2
    hooks:
      - id: shfmt
  #####
  # Secrets
  - repo: https://github.com/Yelp/detect-secrets
    rev: v1.5.0
    hooks:
      - id: detect-secrets
        args: ["--baseline", ".secrets.baseline"]
        exclude: package.lock.json