Part of the Data-driven approaches to understanding dementia EBI course. The session titled "Extracting information from omics data"

Agentic primative repository

🦖 ClawBio — The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.

Conda recipes for the bioconda channel.

A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.

Analysis of Chromosome Conformation Capture data (Hi-C)

"Nextflow in Action: Design and Implement Your Own Bioinformatics Workflows" workshop

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Repository to host tool-specific module files for the Nextflow DSL2 community!

Test data to be used for automated testing with the nf-core pipelines

Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.

nextflow pipeline to get fastas

CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.

📚 Product documentation template for Jekyll

LaBranchoR predicts RNA splicing branchpoints using a LSTM network. LaBranchoR uses only the sequence 1 to 70 base pairs upstream of a three prime splice site as a feature. In our paper, we show th…