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Merged
isaacsas merged 19 commits into from
Sep 13, 2021
Merged

subnetworks and linkagedeficieny #396

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17f6f1a
`subnetworks` and `linkagedeficiency`
yewalenikhil65 Sep 7, 2021
acc697c
exporting `subnetworks` and `linkagedeficiency`
yewalenikhil65 Sep 7, 2021
6401953
test for `subnetworks` and `linkagedeficiency`
yewalenikhil65 Sep 7, 2021
60929f1
Tweaks in tests
yewalenikhil65 Sep 7, 2021
b952fbc
adding intermediary function
yewalenikhil65 Sep 9, 2021
2ebd49d
tweaking tests for updated `subnetworks` and `linkagedeficiency`
yewalenikhil65 Sep 9, 2021
8f67849
updating intermediary function to reduce some alloctions
yewalenikhil65 Sep 10, 2021
8992066
Merge branch 'SciML:master' into myCatalyst
yewalenikhil65 Sep 10, 2021
0e29314
Adopting FlintZZ from nemo for rank
yewalenikhil65 Sep 10, 2021
b996903
Merge branch 'SciML:master' into myCatalyst
yewalenikhil65 Sep 12, 2021
0b5cfbd
updating as per suggestions
yewalenikhil65 Sep 12, 2021
65fa30d
tweaks in tests
yewalenikhil65 Sep 12, 2021
0b07ffe
adding new API functions `subnetworks` and `linkagedeficiency`
yewalenikhil65 Sep 12, 2021
ff5281b
update subnetwork construction to avoid so many allocations
isaacsas Sep 13, 2021
f74f103
fix sparse/Sparse
isaacsas Sep 13, 2021
5f87b48
one more typo
isaacsas Sep 13, 2021
275c75c
Merge branch 'master' into pr/394
isaacsas Sep 13, 2021
bb14e73
fix tests
isaacsas Sep 13, 2021
3391f2c
fix spacing
isaacsas Sep 13, 2021
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one more typo
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@isaacsas
isaacsas committed Sep 13, 2021
commit 5f87b4889af410f0923424a5e52c393adf958ade
2 changes: 1 addition & 1 deletion src/networkapi.jl
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Expand Up @@ -465,7 +465,7 @@ Notes:
= B_{i j}, &\text{otherwise.}
\end{cases}
```
- Set sparse=true for a spe matrix representation
- Set sparse=true for a sparse matrix representation
"""
function complexoutgoingmat(rn::ReactionSystem; sparse=false, B=reactioncomplexes(rn,sparse=sparse)[2])
sparse ? complexoutgoingmat(SparseMatrixCSC{Int,Int}, rn, B) :
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