Merge pull request #94 from JaerongA/main

kabilar · web-flow · commit f2492ecc52a5 · 2023-04-12T14:17:04.000-05:00
Add pytest &amp; update tutorial notebook
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,6 +3,12 @@
 Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and
 [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) convention.
 
+## [0.3.1] - 2023-04-12
+
++ Add - pytest for new `QCmetric` tables.
++ Add - `graphviz` in `requirements.txt`.
++ Update - visualization notebook.
+
 ## [0.3.0] - 2023-03-09
 
 + Add - Demo notebooks and capabilities using GitHub Codespaces
@@ -81,7 +87,8 @@ Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and
 
 + Add - Version
 
-[0.2.7]: https://github.com/datajoint/workflow-array-ephys/releases/tag/0.2.7
+[0.3.1]: https://github.com/datajoint/workflow-array-ephys/releases/tag/0.3.1
+[0.3.0]: https://github.com/datajoint/workflow-array-ephys/releases/tag/0.3.0
 [0.2.6]: https://github.com/datajoint/workflow-array-ephys/releases/tag/0.2.6
 [0.2.5]: https://github.com/datajoint/workflow-array-ephys/releases/tag/0.2.5
 [0.2.4]: https://github.com/datajoint/workflow-array-ephys/releases/tag/0.2.4
diff --git a/StandardConfig.json b/StandardConfig.json
diff --git a/notebooks/10-data_visualization.ipynb b/notebooks/10-data_visualization.ipynb
diff --git a/requirements.txt b/requirements.txt
@@ -8,3 +8,4 @@ element-lab>=0.2.0
 element-session>=0.1.2
 ipykernel>=6.0.1
 neuroconv>=0.2.0
+graphviz
diff --git a/tests/test_pipeline_generation.py b/tests/test_pipeline_generation.py
@@ -21,3 +21,6 @@ def test_generate_pipeline(pipeline):
             in ephys_report.UnitLevelReport.parents(),
         ]
     )
+    
+    # test the connection between quality metric tables
+    assert ephys.QualityMetrics.full_table_name in ephys_report.QualityMetricSet.parents()
diff --git a/workflow_array_ephys/version.py b/workflow_array_ephys/version.py
@@ -2,4 +2,4 @@
 Package metadata
 Update the Docker image tag in `docker-compose.yaml` to match
 """
-__version__ = "0.3.0"
+__version__ = "0.3.1"

Original file line number	Diff line number	Diff line change
`@@ -21,3 +21,6 @@ def test_generate_pipeline(pipeline):`
`21`	`21`	`in ephys_report.UnitLevelReport.parents(),`
`22`	`22`	`]`
`23`	`23`	`)`
	`24`	`+`
	`25`	`+ # test the connection between quality metric tables`
	`26`	`+ assert ephys.QualityMetrics.full_table_name in ephys_report.QualityMetricSet.parents()`