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base repository: drbergman/PhysiCell
base: 1.14.2-drbergman-2.3.0
head repository: drbergman/PhysiCell
compare: 1.14.2-drbergman-2.3.1
- 11 commits
- 4 files changed
- 1 contributor
Commits on Sep 8, 2025
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- division vector was not normalized after orthogonal projection onto orientation-defined plane - this would lead to inconsistent displacements - e.g. in 2D, a rand_vec of (0,0,1) would lead to 0 displacement - the daughter cell was displaced by the full radius and the parent cell by half the radius in the opposite direction - this led to a center of mass shift (in the rand_vec direction) of radius/4 - now, both are displaced by half the radius in opposite directions, preserving center of mass - by using 1/2 the radius, the cells will remain overlapping, which the mechanics module will resolve over timeConfiguration menu - View commit details
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Merge pull request #38 from drbergman/fix-division-displacement-my-pc
Fix division displacement my pc
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Commits on Sep 9, 2025
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remove checks for edge cases in boundary repulsion
- bottom line: at each mechanics time step, it will suffice to push the cell in a cardinal direction to increase the shortest distance to the boundary - this is precisely what the current code currently does the vast majority of the time. - now, it will do so for the previously defined edge cases - in 2D sims, they looked for cells on line y=x - then used signs of x and y positions to determine which direction to push - no check for cells in upper left or lower right corners - the sign of the positions does not accurately convey which way to push (if all corners are negative, they would all push the same way) - in 3D sims, they looked for cells on line x=y=z - similar issues but missing more cases (x=\pm y = \pm z)
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Merge pull request #39 from drbergman/fix-dist-to-edge-edge-cases-my-pc
Fix dist to edge edge cases my pc
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Commits on Oct 10, 2025
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Merge pull request #40 from drbergman/intracellulars-fix
always check sbml_filename exists and set properly
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Merge pull request #41 from drbergman/my-physicell-dev
1.14.2-drbergman-2.3.1
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