khersameesh24
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Sensitive and generalizable somatic point mutation calling with 3D DenseNets
Fast genomics quality control tools for sequencing data, written in Rust.
EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
Additional MultiQC report sections for 10x Genomics Xenium data.
Open source Python library for building bioimage analysis pipelines
Single-cell analysis in Python. Scales to >100M cells.
Accelerated genomics workflows in NextFlow
Repository to host tool-specific module files for the Nextflow DSL2 community!
a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challenge of accurately segmenting individual cells in complex ima…
Integrated pipeline for multiplexed image analysis
https://www.sc-best-practices.org