Merge pull request lisa-lab#132 from gyom/master

made tutorials compatible with python 3

Author: nouiz

.travis.yml

@@ -4,8 +4,8 @@ sudo: false
 
 language: python
 #python:
-#  - "2.7"
-#  - "3.2"
+#  - "2.6"
+#  - "3.3"
 # command to install dependencies
 before_install:
   - wget http://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O miniconda.sh

code/DBN.py

@@ -75,7 +75,7 @@ def __init__(self, numpy_rng, theano_rng=None, n_ins=784,
         # training the DBN by doing stochastic gradient descent on the
         # MLP.
 
-        for i in xrange(self.n_layers):
+        for i in range(self.n_layers):
             # construct the sigmoidal layer
 
             # the size of the input is either the number of hidden
@@ -267,11 +267,11 @@ def build_finetune_functions(self, datasets, batch_size, learning_rate):
 
         # Create a function that scans the entire validation set
         def valid_score():
-            return [valid_score_i(i) for i in xrange(n_valid_batches)]
+            return [valid_score_i(i) for i in range(n_valid_batches)]
 
         # Create a function that scans the entire test set
         def test_score():
-            return [test_score_i(i) for i in xrange(n_test_batches)]
+            return [test_score_i(i) for i in range(n_test_batches)]
 
         return train_fn, valid_score, test_score
 
@@ -329,12 +329,12 @@ def test_DBN(finetune_lr=0.1, pretraining_epochs=100,
     print '... pre-training the model'
     start_time = timeit.default_timer()
     ## Pre-train layer-wise
-    for i in xrange(dbn.n_layers):
+    for i in range(dbn.n_layers):
         # go through pretraining epochs
-        for epoch in xrange(pretraining_epochs):
+        for epoch in range(pretraining_epochs):
             # go through the training set
             c = []
-            for batch_index in xrange(n_train_batches):
+            for batch_index in range(n_train_batches):
                 c.append(pretraining_fns[i](index=batch_index,
                                             lr=pretrain_lr))
             print 'Pre-training layer %i, epoch %d, cost ' % (i, epoch),
@@ -379,7 +379,7 @@ def test_DBN(finetune_lr=0.1, pretraining_epochs=100,
 
     while (epoch < training_epochs) and (not done_looping):
         epoch = epoch + 1
-        for minibatch_index in xrange(n_train_batches):
+        for minibatch_index in range(n_train_batches):
 
             minibatch_avg_cost = train_fn(minibatch_index)
             iter = (epoch - 1) * n_train_batches + minibatch_index

code/SdA.py

@@ -29,6 +29,9 @@
    Systems 19, 2007
 
 """
+
+from __future__ import print_function
+
 import os
 import sys
 import timeit
@@ -116,7 +119,7 @@ def __init__(
         # stochastich gradient descent on the MLP
 
         # start-snippet-2
-        for i in xrange(self.n_layers):
+        for i in range(self.n_layers):
             # construct the sigmoidal layer
 
             # the size of the input is either the number of hidden units of
@@ -254,9 +257,9 @@ def build_finetune_functions(self, datasets, batch_size, learning_rate):
 
         # compute number of minibatches for training, validation and testing
         n_valid_batches = valid_set_x.get_value(borrow=True).shape[0]
-        n_valid_batches /= batch_size
+        n_valid_batches //= batch_size
         n_test_batches = test_set_x.get_value(borrow=True).shape[0]
-        n_test_batches /= batch_size
+        n_test_batches //= batch_size
 
         index = T.lscalar('index')  # index to a [mini]batch
 
@@ -314,11 +317,11 @@ def build_finetune_functions(self, datasets, batch_size, learning_rate):
 
         # Create a function that scans the entire validation set
         def valid_score():
-            return [valid_score_i(i) for i in xrange(n_valid_batches)]
+            return [valid_score_i(i) for i in range(n_valid_batches)]
 
         # Create a function that scans the entire test set
         def test_score():
-            return [test_score_i(i) for i in xrange(n_test_batches)]
+            return [test_score_i(i) for i in range(n_test_batches)]
 
         return train_fn, valid_score, test_score
 
@@ -357,12 +360,12 @@ def test_SdA(finetune_lr=0.1, pretraining_epochs=15,
 
     # compute number of minibatches for training, validation and testing
     n_train_batches = train_set_x.get_value(borrow=True).shape[0]
-    n_train_batches /= batch_size
+    n_train_batches //= batch_size
 
     # numpy random generator
     # start-snippet-3
     numpy_rng = numpy.random.RandomState(89677)
-    print '... building the model'
+    print('... building the model')
     # construct the stacked denoising autoencoder class
     sda = SdA(
         numpy_rng=numpy_rng,
@@ -374,52 +377,51 @@ def test_SdA(finetune_lr=0.1, pretraining_epochs=15,
     #########################
     # PRETRAINING THE MODEL #
     #########################
-    print '... getting the pretraining functions'
+    print('... getting the pretraining functions')
     pretraining_fns = sda.pretraining_functions(train_set_x=train_set_x,
                                                 batch_size=batch_size)
 
-    print '... pre-training the model'
+    print('... pre-training the model')
     start_time = timeit.default_timer()
     ## Pre-train layer-wise
     corruption_levels = [.1, .2, .3]
-    for i in xrange(sda.n_layers):
+    for i in range(sda.n_layers):
         # go through pretraining epochs
-        for epoch in xrange(pretraining_epochs):
+        for epoch in range(pretraining_epochs):
             # go through the training set
             c = []
-            for batch_index in xrange(n_train_batches):
+            for batch_index in range(n_train_batches):
                 c.append(pretraining_fns[i](index=batch_index,
                          corruption=corruption_levels[i],
                          lr=pretrain_lr))
-            print 'Pre-training layer %i, epoch %d, cost ' % (i, epoch),
-            print numpy.mean(c)
+            print('Pre-training layer %i, epoch %d, cost %f' % (i, epoch, numpy.mean(c)))
 
     end_time = timeit.default_timer()
 
-    print >> sys.stderr, ('The pretraining code for file ' +
-                          os.path.split(__file__)[1] +
-                          ' ran for %.2fm' % ((end_time - start_time) / 60.))
+    print(('The pretraining code for file ' +
+           os.path.split(__file__)[1] +
+           ' ran for %.2fm' % ((end_time - start_time) / 60.)), file=sys.stderr)
     # end-snippet-4
     ########################
     # FINETUNING THE MODEL #
     ########################
 
     # get the training, validation and testing function for the model
-    print '... getting the finetuning functions'
+    print('... getting the finetuning functions')
     train_fn, validate_model, test_model = sda.build_finetune_functions(
         datasets=datasets,
         batch_size=batch_size,
         learning_rate=finetune_lr
     )
 
-    print '... finetunning the model'
+    print('... finetunning the model')
     # early-stopping parameters
     patience = 10 * n_train_batches  # look as this many examples regardless
     patience_increase = 2.  # wait this much longer when a new best is
                             # found
     improvement_threshold = 0.995  # a relative improvement of this much is
                                    # considered significant
-    validation_frequency = min(n_train_batches, patience / 2)
+    validation_frequency = min(n_train_batches, patience // 2)
                                   # go through this many
                                   # minibatche before checking the network
                                   # on the validation set; in this case we
@@ -434,7 +436,7 @@ def test_SdA(finetune_lr=0.1, pretraining_epochs=15,
 
     while (epoch < training_epochs) and (not done_looping):
         epoch = epoch + 1
-        for minibatch_index in xrange(n_train_batches):
+        for minibatch_index in range(n_train_batches):
             minibatch_avg_cost = train_fn(minibatch_index)
             iter = (epoch - 1) * n_train_batches + minibatch_index
 
@@ -480,9 +482,9 @@ def test_SdA(finetune_lr=0.1, pretraining_epochs=15,
         )
         % (best_validation_loss * 100., best_iter + 1, test_score * 100.)
     )
-    print >> sys.stderr, ('The training code for file ' +
-                          os.path.split(__file__)[1] +
-                          ' ran for %.2fm' % ((end_time - start_time) / 60.))
+    print(('The training code for file ' +
+           os.path.split(__file__)[1] +
+           ' ran for %.2fm' % ((end_time - start_time) / 60.)), file=sys.stderr)
 
 
 if __name__ == '__main__':

code/cA.py

@@ -28,6 +28,9 @@
    Systems 19, 2007
 
 """
+
+from __future__ import print_function
+
 import os
 import sys
 import timeit
@@ -205,7 +208,7 @@ def get_cost_updates(self, contraction_level, learning_rate):
                              axis=1)
 
         # Compute the jacobian and average over the number of samples/minibatch
-        self.L_jacob = T.sum(J ** 2) / self.n_batchsize
+        self.L_jacob = T.sum(J ** 2) // self.n_batchsize
 
         # note : L is now a vector, where each element is the
         #        cross-entropy cost of the reconstruction of the
@@ -246,7 +249,7 @@ def test_cA(learning_rate=0.01, training_epochs=20,
     train_set_x, train_set_y = datasets[0]
 
     # compute number of minibatches for training, validation and testing
-    n_train_batches = train_set_x.get_value(borrow=True).shape[0] / batch_size
+    n_train_batches = train_set_x.get_value(borrow=True).shape[0] // batch_size
 
     # allocate symbolic variables for the data
     index = T.lscalar()    # index to a [mini]batch
@@ -283,22 +286,22 @@ def test_cA(learning_rate=0.01, training_epochs=20,
     ############
 
     # go through training epochs
-    for epoch in xrange(training_epochs):
+    for epoch in range(training_epochs):
         # go through trainng set
         c = []
-        for batch_index in xrange(n_train_batches):
+        for batch_index in range(n_train_batches):
             c.append(train_ca(batch_index))
 
         c_array = numpy.vstack(c)
-        print 'Training epoch %d, reconstruction cost ' % epoch, numpy.mean(
-            c_array[0]), ' jacobian norm ', numpy.mean(numpy.sqrt(c_array[1]))
+        print('Training epoch %d, reconstruction cost ' % epoch, numpy.mean(
+            c_array[0]), ' jacobian norm ', numpy.mean(numpy.sqrt(c_array[1])))
 
     end_time = timeit.default_timer()
 
     training_time = (end_time - start_time)
 
-    print >> sys.stderr, ('The code for file ' + os.path.split(__file__)[1] +
-                          ' ran for %.2fm' % ((training_time) / 60.))
+    print(('The code for file ' + os.path.split(__file__)[1] +
+           ' ran for %.2fm' % ((training_time) / 60.)), file=sys.stderr)
     image = Image.fromarray(tile_raster_images(
         X=ca.W.get_value(borrow=True).T,
         img_shape=(28, 28), tile_shape=(10, 10),

code/convolutional_mlp.py

@@ -21,6 +21,9 @@
    http://yann.lecun.com/exdb/publis/pdf/lecun-98.pdf
 
 """
+
+from __future__ import print_function
+
 import os
 import sys
 import timeit
@@ -70,7 +73,7 @@ def __init__(self, rng, input, filter_shape, image_shape, poolsize=(2, 2)):
         # each unit in the lower layer receives a gradient from:
         # "num output feature maps * filter height * filter width" /
         #   pooling size
-        fan_out = (filter_shape[0] * numpy.prod(filter_shape[2:]) /
+        fan_out = (filter_shape[0] * numpy.prod(filter_shape[2:]) //
                    numpy.prod(poolsize))
         # initialize weights with random weights
         W_bound = numpy.sqrt(6. / (fan_in + fan_out))
@@ -145,9 +148,9 @@ def evaluate_lenet5(learning_rate=0.1, n_epochs=200,
     n_train_batches = train_set_x.get_value(borrow=True).shape[0]
     n_valid_batches = valid_set_x.get_value(borrow=True).shape[0]
     n_test_batches = test_set_x.get_value(borrow=True).shape[0]
-    n_train_batches /= batch_size
-    n_valid_batches /= batch_size
-    n_test_batches /= batch_size
+    n_train_batches //= batch_size
+    n_valid_batches //= batch_size
+    n_test_batches //= batch_size
 
     # allocate symbolic variables for the data
     index = T.lscalar()  # index to a [mini]batch
@@ -160,7 +163,7 @@ def evaluate_lenet5(learning_rate=0.1, n_epochs=200,
     ######################
     # BUILD ACTUAL MODEL #
     ######################
-    print '... building the model'
+    print('... building the model')
 
     # Reshape matrix of rasterized images of shape (batch_size, 28 * 28)
     # to a 4D tensor, compatible with our LeNetConvPoolLayer
@@ -261,14 +264,14 @@ def evaluate_lenet5(learning_rate=0.1, n_epochs=200,
     ###############
     # TRAIN MODEL #
     ###############
-    print '... training'
+    print('... training')
     # early-stopping parameters
     patience = 10000  # look as this many examples regardless
     patience_increase = 2  # wait this much longer when a new best is
                            # found
     improvement_threshold = 0.995  # a relative improvement of this much is
                                    # considered significant
-    validation_frequency = min(n_train_batches, patience / 2)
+    validation_frequency = min(n_train_batches, patience // 2)
                                   # go through this many
                                   # minibatche before checking the network
                                   # on the validation set; in this case we
@@ -284,19 +287,19 @@ def evaluate_lenet5(learning_rate=0.1, n_epochs=200,
 
     while (epoch < n_epochs) and (not done_looping):
         epoch = epoch + 1
-        for minibatch_index in xrange(n_train_batches):
+        for minibatch_index in range(n_train_batches):
 
             iter = (epoch - 1) * n_train_batches + minibatch_index
 
             if iter % 100 == 0:
-                print 'training @ iter = ', iter
+                print('training @ iter = ', iter)
             cost_ij = train_model(minibatch_index)
 
             if (iter + 1) % validation_frequency == 0:
 
                 # compute zero-one loss on validation set
                 validation_losses = [validate_model(i) for i
-                                     in xrange(n_valid_batches)]
+                                     in range(n_valid_batches)]
                 this_validation_loss = numpy.mean(validation_losses)
                 print('epoch %i, minibatch %i/%i, validation error %f %%' %
                       (epoch, minibatch_index + 1, n_train_batches,
@@ -317,7 +320,7 @@ def evaluate_lenet5(learning_rate=0.1, n_epochs=200,
                     # test it on the test set
                     test_losses = [
                         test_model(i)
-                        for i in xrange(n_test_batches)
+                        for i in range(n_test_batches)
                     ]
                     test_score = numpy.mean(test_losses)
                     print(('     epoch %i, minibatch %i/%i, test error of '
@@ -334,9 +337,9 @@ def evaluate_lenet5(learning_rate=0.1, n_epochs=200,
     print('Best validation score of %f %% obtained at iteration %i, '
           'with test performance %f %%' %
           (best_validation_loss * 100., best_iter + 1, test_score * 100.))
-    print >> sys.stderr, ('The code for file ' +
-                          os.path.split(__file__)[1] +
-                          ' ran for %.2fm' % ((end_time - start_time) / 60.))
+    print(('The code for file ' +
+           os.path.split(__file__)[1] +
+           ' ran for %.2fm' % ((end_time - start_time) / 60.)), file=sys.stderr)
 
 if __name__ == '__main__':
     evaluate_lenet5()