Merge pull request #3 from molstar/move-code-around

Refactoring

Author: dsehnal

ciftools/LICENSE renamed to LICENSE

@@ -0,0 +1,2 @@
+from ciftools.binary.decoder import decode_cif_data
+from ciftools.binary.writer import BinaryCIFWriter

README.md

@@ -1,8 +1,8 @@
 from typing import Union
 
 import numpy as np
-from ciftools.src.binary.encoding.data_types import DataType
-from ciftools.src.binary.encoding.encodings import (
+from ciftools.binary.encoding.data_types import DataType
+from ciftools.binary.encoding.encodings import (
     ByteArrayEncoding,
     DeltaEncoding,
     FixedPointEncoding,
@@ -11,9 +11,9 @@
     RunLengthEncoding,
     StringArrayEncoding,
 )
-from ciftools.src.binary.encoding.types import EncodedCIFColumn, EncodedCIFData
-from ciftools.src.cif_format.base import CIFColumnBase
-from ciftools.src.cif_format.binary.column import BinaryCIFColumn
+from ciftools.binary.encoding.types import EncodedCIFColumn, EncodedCIFData
+from ciftools.cif_format.base import CIFColumnBase
+from ciftools.cif_format.binary.column import BinaryCIFColumn
 
 
 def decode_cif_column(column: EncodedCIFColumn) -> CIFColumnBase:
@@ -115,7 +115,7 @@ def _decode_string_array(data: np.ndarray, encoding: StringArrayEncoding) -> lis
     strings = [""]
 
     for i in range(1, len(offsets)):
-        strings.append(string_data[offsets[i - 1]: offsets[i]])  # type: ignore
+        strings.append(string_data[offsets[i - 1] : offsets[i]])  # type: ignore
 
     return [strings[i + 1] for i in indices]  # type: ignore
 

ciftools/README.md

@@ -1,9 +1,9 @@
 import abc
-from ciftools.src.binary.encoding.types import EncodedCIFData
+
+from ciftools.binary.encoding.types import EncodedCIFData
 
 
 class BinaryCIFEncoderBase(abc.ABC):
     @abc.abstractmethod
     def encode_cif_data(self, data: any) -> EncodedCIFData:
         pass
-

ciftools/src/__init__.py renamed to ciftools/__init__.py

@@ -1,6 +1,6 @@
 import abc
 
-from ciftools.src.binary.encoding.types import EncodedCIFData
+from ciftools.binary.encoding.types import EncodedCIFData
 
 
 class CIFEncoderBase(abc.ABC):