Caravagna Lab
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47 repositories
INCOMMON
PublicBayesian inference of gene mutant dosage from targeted panels without matched normaltumourevo
PublicTumour evolution bioinformatics analysis pipeline from bulk sequencingProCESS
PublicA programmable cancer evolution spatial simulation frameworkmaterial-tickTack-2026
PublicSCOUT-website
PublicProCESS-examples
PublicSCOUT
Publicdevil
PublicFast and scalable inference for single-cell differential gene expression of multiple patientstickTack
PublicPseudo-timing copy number alterations in cancerlineaGT
PublicVariational lineage inference from gene therapy assays with insertional mutagenesis and somatic mutationsDeConveil
PublicExtension of Differential Gene Expression testing to handle genome aneuploidy in cancerDECONVEILp
PublicpylineaGT
PublicINCOMMON_shiny
PublicTOSCA
Publicbascule
PublicVariational inference of heterogenous somatic mutational signatures using a catalogue and non-parametric clusteringPEPI
PublicCNAqc
PublicClonal and subclonal Copy Number Alteration quality check integrating somatic mutationbiPOD
PublicVariational inference for population dynamics parameters from heterogenous longitudinal data sourcesmobster
PublicModel-based tumour subclonal deconvolution using population geneticschordR
PublicSearching, downloading and analysing relevant data from the MSK-CHORD cohortMOBSTERm
Publicbioconda-recipes
Publiccaravagnalab.github.io
Publicmulti-package-containers
Publicpybascule
Publicsimbascule
PublicVIBER
PublicVariational inference for subclonal deconvolution with multivariate Binomial mixturesctree
PublicTumour clone trees for subclonal deconvolution from bulk sequencing datastaged-recipes
Public
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