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base repository: rust-bio/rust-htslib
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base: v0.47.1
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head repository: rust-bio/rust-htslib
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compare: v0.48.0
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  • 8 commits
  • 10 files changed
  • 6 contributors

Commits on Nov 12, 2024

  1. refactor: improved readability for read orientation inference (#439) 

    * refactor: improved readability for read orientation inference

* fmt

* another testcase
    @johanneskoester
    johanneskoester authored Nov 12, 2024
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  2. fix: return error when bgzf_open fails to open a file (#444) 

    * Before `rust_htslib::bgzf:Reader` and `rust_htslib::bgzf:Writer`
    would never fail when opening a file that could not be opened
    and it would allow writing to `rust_htslib::bgzf:Writer` without
    returning any error messages.

Co-authored-by: Johannes Köster <[email protected]>
    @ghuls @johanneskoester
    ghuls and johanneskoester authored Nov 12, 2024
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  3. feat: Add to_vcf_string method for bcf::Record (#443) 

    * Add bcf record to_vcf_string method and test

* Reformat as Display trait

* Revert to Record::to_vcf_string method

Added return value checking on vcf_format, which also suggests that the
methods should return a Result and shound't be implemented directly as
a Display trait.

---------

Co-authored-by: Johannes Köster <[email protected]>
    @ctsa @johanneskoester
    ctsa and johanneskoester authored Nov 12, 2024
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  4. Update dependabot.yml

    @johanneskoester
    johanneskoester authored Nov 12, 2024
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  5. deps: update derive-new requirement from 0.5 to 0.7 (#450) 

    Updates the requirements on [derive-new](https://github.com/nrc/derive-new) to permit the latest version.
- [Commits](nrc/derive-new@0.5.1...0.7)

---
updated-dependencies:
- dependency-name: derive-new
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Felix Mölder <[email protected]>
    @dependabot @FelixMoelder
    dependabot[bot] and FelixMoelder authored Nov 12, 2024
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  6. deps: update pretty_assertions requirement from 0.6 to 1.4 (#449) 

    Updates the requirements on [pretty_assertions](https://github.com/rust-pretty-assertions/rust-pretty-assertions) to permit the latest version.
- [Release notes](https://github.com/rust-pretty-assertions/rust-pretty-assertions/releases)
- [Changelog](https://github.com/rust-pretty-assertions/rust-pretty-assertions/blob/main/CHANGELOG.md)
- [Commits](rust-pretty-assertions/rust-pretty-assertions@v0.6.0...v1.4.1)

---
updated-dependencies:
- dependency-name: pretty_assertions
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Felix Mölder <[email protected]>
    @dependabot @FelixMoelder
    dependabot[bot] and FelixMoelder authored Nov 12, 2024
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  7. deps: update thiserror requirement from 1 to 2 (#448) 

    Updates the requirements on [thiserror](https://github.com/dtolnay/thiserror) to permit the latest version.
- [Release notes](https://github.com/dtolnay/thiserror/releases)
- [Commits](dtolnay/thiserror@1.0.0...2.0.3)

---
updated-dependencies:
- dependency-name: thiserror
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Felix Mölder <[email protected]>
    @dependabot @FelixMoelder
    dependabot[bot] and FelixMoelder authored Nov 12, 2024
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  8. chore(master): release 0.48.0 (#452) 

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    @github-actions
    github-actions[bot] authored Nov 12, 2024
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