Merge branch 't/29706/move_extension_options_from_src_module_list_py_to__distutils___directives_in_the_individual_files' into t/29785/move_extension_options_from_src_module_list_py_to__distutils___directives_in_the_individual_files__part_3__get_rid_of_uname_specific_

Author: Matthias Koeppe

src/module_list.py

@@ -125,22 +125,7 @@
     ##
     ################################
 
-    Extension('sage.algebras.quatalg.quaternion_algebra_element',
-               sources = ['sage/algebras/quatalg/quaternion_algebra_element.pyx'],
-               language='c++',
-               libraries = ["gmp", "m", "ntl"]),
-
-    Extension('*', sources = ['sage/algebras/letterplace/*.pyx']),
-
-    Extension('*', sources = ['sage/algebras/finite_dimensional_algebras/*.pyx']),
-
-    Extension('sage.algebras.quatalg.quaternion_algebra_cython',
-               sources = ['sage/algebras/quatalg/quaternion_algebra_cython.pyx'],
-               language='c++',
-               libraries = ["gmp", "m", "ntl"]),
-
-    Extension('sage.algebras.lie_algebras.lie_algebra_element',
-              sources = ["sage/algebras/lie_algebras/lie_algebra_element.pyx"]),
+    Extension('*', ['sage/algebras/**/*.pyx']),
 
     ################################
     ##
@@ -271,54 +256,7 @@
     ##
     ################################
 
-    Extension('sage.geometry.point_collection',
-              sources = ['sage/geometry/point_collection.pyx']),
-
-    Extension('sage.geometry.toric_lattice_element',
-              sources = ['sage/geometry/toric_lattice_element.pyx']),
-
-    Extension('sage.geometry.integral_points',
-              sources = ['sage/geometry/integral_points.pyx']),
-
-    Extension('sage.geometry.triangulation.base',
-              sources = ['sage/geometry/triangulation/base.pyx',
-                         'sage/geometry/triangulation/functions.cc',
-                         'sage/geometry/triangulation/data.cc',
-                         'sage/geometry/triangulation/triangulations.cc'],
-              depends = ['sage/geometry/triangulation/functions.h',
-                         'sage/geometry/triangulation/data.h',
-                         'sage/geometry/triangulation/triangulations.h'],
-              language="c++"),
-
-    Extension('sage.geometry.polyhedron.combinatorial_polyhedron.base',
-              sources = ['sage/geometry/polyhedron/combinatorial_polyhedron/base.pyx']),
-
-    Extension('sage.geometry.polyhedron.combinatorial_polyhedron.list_of_faces',
-              sources = ['sage/geometry/polyhedron/combinatorial_polyhedron/list_of_faces.pyx'],
-              depends = ['sage/geometry/polyhedron/combinatorial_polyhedron/bit_vector_operations.cc'],
-              language="c++",
-              extra_compile_args=['-std=c++11']),
-
-    Extension('sage.geometry.polyhedron.combinatorial_polyhedron.face_iterator',
-              sources = ['sage/geometry/polyhedron/combinatorial_polyhedron/face_iterator.pyx'],
-              depends = ['sage/geometry/polyhedron/combinatorial_polyhedron/bit_vector_operations.cc'],
-              language="c++",
-              extra_compile_args=['-std=c++11']),
-
-    Extension('sage.geometry.polyhedron.combinatorial_polyhedron.polyhedron_face_lattice',
-              sources = ['sage/geometry/polyhedron/combinatorial_polyhedron/polyhedron_face_lattice.pyx'],
-              depends = ['sage/geometry/polyhedron/combinatorial_polyhedron/bit_vector_operations.cc'],
-              language="c++",
-              extra_compile_args=['-std=c++11']),
-
-    Extension('sage.geometry.polyhedron.combinatorial_polyhedron.combinatorial_face',
-              sources = ['sage/geometry/polyhedron/combinatorial_polyhedron/combinatorial_face.pyx'],
-              depends = ['sage/geometry/polyhedron/combinatorial_polyhedron/bit_vector_operations.cc'],
-              language="c++",
-              extra_compile_args=['-std=c++11']),
-
-    Extension('sage.geometry.polyhedron.combinatorial_polyhedron.conversions',
-              sources = ['sage/geometry/polyhedron/combinatorial_polyhedron/conversions.pyx']),
+    Extension('*', ['sage/geometry/**/*.pyx']),
 
     ################################
     ##
@@ -646,110 +584,7 @@
     ##
     ###################################
 
-    Extension('sage.libs.ntl.convert',
-              sources = ["sage/libs/ntl/convert.pyx"],
-              libraries = ["ntl", "gmp"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.error',
-              sources = ["sage/libs/ntl/error.pyx"],
-              libraries = ["ntl", "gmp"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.ntl_GF2',
-              sources = ["sage/libs/ntl/ntl_GF2.pyx"],
-              libraries = ["ntl", "gmp"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.ntl_GF2E',
-              sources = ["sage/libs/ntl/ntl_GF2E.pyx"],
-              libraries = ["ntl", "gmp", "m"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.ntl_GF2EContext',
-              sources = ["sage/libs/ntl/ntl_GF2EContext.pyx"],
-              libraries = ["ntl", "gmp", "m"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.ntl_GF2EX',
-              sources = ["sage/libs/ntl/ntl_GF2EX.pyx"],
-              libraries = ["ntl", "gmp", "m"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.ntl_GF2X',
-              sources = ["sage/libs/ntl/ntl_GF2X.pyx"],
-              libraries = ["ntl", "gmp", "m"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.ntl_lzz_p',
-              sources = ["sage/libs/ntl/ntl_lzz_p.pyx"],
-              libraries = ["ntl", "gmp", "m"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.ntl_lzz_pContext',
-              sources = ["sage/libs/ntl/ntl_lzz_pContext.pyx"],
-              libraries = ["ntl", "gmp", "m"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.ntl_lzz_pX',
-              sources = ["sage/libs/ntl/ntl_lzz_pX.pyx"],
-              libraries = ["ntl", "gmp", "m"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.ntl_mat_GF2',
-              sources = ["sage/libs/ntl/ntl_mat_GF2.pyx"],
-              libraries = ["ntl", "gmp", "m"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.ntl_mat_GF2E',
-              sources = ["sage/libs/ntl/ntl_mat_GF2E.pyx"],
-              libraries = ["ntl", "gmp", "m"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.ntl_mat_ZZ',
-              sources = ["sage/libs/ntl/ntl_mat_ZZ.pyx"],
-              libraries = ["ntl", "gmp", "m"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.ntl_ZZ',
-              sources = ["sage/libs/ntl/ntl_ZZ.pyx"],
-              libraries = ["ntl", "gmp", "m"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.ntl_ZZX',
-              sources = ["sage/libs/ntl/ntl_ZZX.pyx"],
-              libraries = ["ntl", "gmp", "m"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.ntl_ZZ_p',
-              sources = ["sage/libs/ntl/ntl_ZZ_p.pyx"],
-              libraries = ["ntl", "gmp", "m"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.ntl_ZZ_pContext',
-              sources = ["sage/libs/ntl/ntl_ZZ_pContext.pyx"],
-              libraries = ["ntl", "gmp", "m"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.ntl_ZZ_pE',
-              sources = ["sage/libs/ntl/ntl_ZZ_pE.pyx"],
-              libraries = ["ntl", "gmp", "m"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.ntl_ZZ_pEContext',
-              sources = ["sage/libs/ntl/ntl_ZZ_pEContext.pyx"],
-              libraries = ["ntl", "gmp", "m"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.ntl_ZZ_pEX',
-              sources = ["sage/libs/ntl/ntl_ZZ_pEX.pyx"],
-              libraries = ["ntl", "gmp", "m"],
-              language='c++'),
-
-    Extension('sage.libs.ntl.ntl_ZZ_pX',
-              sources = ["sage/libs/ntl/ntl_ZZ_pX.pyx"],
-              libraries = ["ntl", "gmp", "m"],
-              language='c++'),
+    Extension('*', ["sage/libs/ntl/*.pyx"]),
 
     ################################
     ##
@@ -922,97 +757,15 @@
     ##
     ################################
 
-    Extension('sage.modular.arithgroup.congroup',
-              sources = ['sage/modular/arithgroup/congroup.pyx']),
-
-    Extension('sage.modular.arithgroup.farey_symbol',
-              sources = ['sage/modular/arithgroup/farey_symbol.pyx']),
-
-    Extension('sage.modular.arithgroup.arithgroup_element',
-              sources = ['sage/modular/arithgroup/arithgroup_element.pyx']),
-
-    Extension('sage.modular.hypergeometric_misc',
-              sources = ['sage/modular/hypergeometric_misc.pyx']),
-
-    Extension('sage.modular.modform.eis_series_cython',
-              sources = ['sage/modular/modform/eis_series_cython.pyx']),
-
-    Extension('sage.modular.modform.l_series_gross_zagier_coeffs',
-              sources = ['sage/modular/modform/l_series_gross_zagier_coeffs.pyx']),
-
-    Extension('sage.modular.modsym.apply',
-              sources = ['sage/modular/modsym/apply.pyx'],
-              extra_compile_args=["-D_XPG6"]),
-
-    Extension('sage.modular.modsym.manin_symbol',
-              sources = ['sage/modular/modsym/manin_symbol.pyx']),
-
-    Extension('sage.modular.modsym.relation_matrix_pyx',
-              sources = ['sage/modular/modsym/relation_matrix_pyx.pyx']),
-
-    Extension('sage.modular.modsym.heilbronn',
-              sources = ['sage/modular/modsym/heilbronn.pyx'],
-              extra_compile_args=["-D_XPG6"]),
-
-    Extension('sage.modular.modsym.p1list',
-              sources = ['sage/modular/modsym/p1list.pyx']),
-
-    Extension('sage.modular.pollack_stevens.dist',
-              sources = ['sage/modular/pollack_stevens/dist.pyx'],
-              libraries = ["gmp", "zn_poly"],
-              extra_compile_args = ["-D_XPG6"]),
+    Extension('*', ['sage/modular/**/*.pyx']),
 
     ################################
     ##
     ## sage.modules
     ##
     ################################
 
-    Extension('sage.modules.vector_rational_sparse',
-              sources = ['sage/modules/vector_rational_sparse.pyx']),
-
-    Extension('sage.modules.vector_integer_sparse',
-              sources = ['sage/modules/vector_integer_sparse.pyx']),
-
-    Extension('sage.modules.vector_modn_sparse',
-              sources = ['sage/modules/vector_modn_sparse.pyx']),
-
-    Extension('sage.modules.finite_submodule_iter',
-              sources = ['sage/modules/finite_submodule_iter.pyx']),
-
-    Extension('sage.modules.free_module_element',
-              sources = ['sage/modules/free_module_element.pyx']),
-
-    Extension('sage.modules.module',
-              sources = ['sage/modules/module.pyx']),
-
-    Extension('sage.modules.vector_complex_double_dense',
-              ['sage/modules/vector_complex_double_dense.pyx']),
-
-    Extension('sage.modules.vector_double_dense',
-              ['sage/modules/vector_double_dense.pyx']),
-
-    Extension('sage.modules.vector_integer_dense',
-              sources = ['sage/modules/vector_integer_dense.pyx']),
-
-    Extension('sage.modules.vector_modn_dense',
-              sources = ['sage/modules/vector_modn_dense.pyx']),
-
-    Extension('sage.modules.vector_mod2_dense',
-              sources = ['sage/modules/vector_mod2_dense.pyx'],
-              libraries = m4ri_libs + gd_libs + png_libs,
-              library_dirs = m4ri_library_dirs + gd_library_dirs + png_library_dirs,
-              include_dirs = m4ri_include_dirs + gd_include_dirs + png_include_dirs,
-              extra_compile_args = m4ri_extra_compile_args),
-
-    Extension('sage.modules.vector_rational_dense',
-              sources = ['sage/modules/vector_rational_dense.pyx']),
-
-    Extension('sage.modules.vector_real_double_dense',
-              ['sage/modules/vector_real_double_dense.pyx']),
-
-    Extension('sage.modules.with_basis.indexed_element',
-              sources = ['sage/modules/with_basis/indexed_element.pyx']),
+    Extension('*', ['sage/modules/**/*.pyx']),
 
     ################################
     ##
@@ -1558,31 +1311,7 @@
     ##
     ################################
 
-    Extension('sage.schemes.elliptic_curves.descent_two_isogeny',
-              sources = ['sage/schemes/elliptic_curves/descent_two_isogeny.pyx'],
-              libraries = ['ratpoints']),
-
-    Extension('sage.schemes.elliptic_curves.period_lattice_region',
-              sources = ['sage/schemes/elliptic_curves/period_lattice_region.pyx']),
-    
-    Extension('sage.schemes.elliptic_curves.mod_sym_num',
-              sources = ['sage/schemes/elliptic_curves/mod_sym_num.pyx']),
-
-    Extension('sage.schemes.hyperelliptic_curves.hypellfrob',
-              sources = ['sage/schemes/hyperelliptic_curves/hypellfrob.pyx',
-                         'sage/schemes/hyperelliptic_curves/hypellfrob/hypellfrob.cpp',
-                         'sage/schemes/hyperelliptic_curves/hypellfrob/recurrences_ntl.cpp',
-                         'sage/schemes/hyperelliptic_curves/hypellfrob/recurrences_zn_poly.cpp'],
-              libraries = ['gmp', 'ntl', 'zn_poly'],
-              depends = ['sage/schemes/hyperelliptic_curves/hypellfrob/hypellfrob.h',
-                         'sage/schemes/hyperelliptic_curves/hypellfrob/recurrences_ntl.h',
-                         'sage/schemes/hyperelliptic_curves/hypellfrob/recurrences_zn_poly.h'],
-              language = 'c++',
-              include_dirs = ['sage/libs/ntl/',
-                              'sage/schemes/hyperelliptic_curves/hypellfrob/']),
-
-    Extension('sage.schemes.toric.divisor_class',
-              sources = ['sage/schemes/toric/divisor_class.pyx']),
+    Extension('*', ['sage/schemes/**/*.pyx']),
 
     ################################
     ##
@@ -1598,39 +1327,14 @@
     ##
     ################################
 
-    Extension('sage.stats.hmm.util',
-              sources = ['sage/stats/hmm/util.pyx']),
-
-    Extension('sage.stats.hmm.distributions',
-              sources = ['sage/stats/hmm/distributions.pyx']),
-
-    Extension('sage.stats.hmm.hmm',
-              sources = ['sage/stats/hmm/hmm.pyx']),
-
-    Extension('sage.stats.hmm.chmm',
-              sources = ['sage/stats/hmm/chmm.pyx']),
-
-    Extension('sage.stats.intlist',
-              sources = ['sage/stats/intlist.pyx']),
-
-    Extension('sage.stats.distributions.discrete_gaussian_integer',
-              sources = ['sage/stats/distributions/discrete_gaussian_integer.pyx', 'sage/stats/distributions/dgs_gauss_mp.c', 'sage/stats/distributions/dgs_gauss_dp.c', 'sage/stats/distributions/dgs_bern.c'],
-              depends = ['sage/stats/distributions/dgs_gauss.h', 'sage/stats/distributions/dgs_bern.h', 'sage/stats/distributions/dgs_misc.h'],
-              extra_compile_args = ["-D_XOPEN_SOURCE=600"]),
+    Extension('*', ['sage/stats/**/*.pyx']),
 
     ################################
     ##
     ## sage.structure
     ##
     ################################
 
-    # Compile this with -Os because it works around a bug with
-    # GCC-4.7.3 + Cython 0.19 on Itanium, see Trac #14452. Moreover, it
-    # actually results in faster code than -O3.
-    Extension('sage.structure.element',
-              sources = ['sage/structure/element.pyx'],
-              extra_compile_args=["-Os"]),
-
     Extension('*', ['sage/structure/*.pyx']),
 
     ################################
@@ -1647,10 +1351,6 @@
     ##
     ################################
 
-    Extension('sage.tests.stl_vector',
-              sources = ['sage/tests/stl_vector.pyx'],
-              language = 'c++'),
+    Extension('*', ['sage/tests/**/*.pyx'])
 
-    Extension('sage.tests.cython',
-              sources = ['sage/tests/cython.pyx']),
 ]

src/sage/algebras/quatalg/quaternion_algebra_cython.pyx

@@ -1,3 +1,5 @@
+# distutils: language = c++
+# distutils: libraries = gmp m ntl
 """
 Optimized Cython code needed by quaternion algebras
 

src/sage/algebras/quatalg/quaternion_algebra_element.pyx

@@ -1,3 +1,5 @@
+# distutils: language = c++
+# distutils: libraries = gmp m ntl
 """
 Elements of Quaternion Algebras