VERSION 0.9.7

Author: ratzeni

README.md

@@ -17,7 +17,8 @@ To run Solida, Conda e Mamba must be presents in your computer.
 To install Conda, see [https://conda.io/miniconda.html](https://conda.io/miniconda.html) 
 To install Mamba, see [https://github.com/mamba-org/mamba](https://github.com/mamba-org/mamba)
 ```bash
-conda install -c conda-forge mamba```
+conda install -c conda-forge mamba
+```
 
 
 ## Usage

solida/VERSION

@@ -1 +1 @@
-0.9.7.1
+0.9.7.2

solida/cache_manager.py

@@ -47,13 +47,13 @@ def clone(self, label):
             requirements_path = os.path.join(repo_dir, self.core_environment_file)
             if not path_exists(requirements_path):
                 data = {'channels': ['bioconda', 'conda-forge', 'defaults'],
-                        'dependencies': ['python==3.6.1', 'pip']}
+                        'dependencies': ['python==3.7', 'pip']}
                 dump(data, requirements_path)
 
             requirements_path = os.path.join(repo_dir, self.environment_file)
             if not path_exists(requirements_path):
                 data = {'channels': ['bioconda', 'conda-forge', 'defaults'],
-                        'dependencies': ['snakemake', 'drmaa==0.7.8']}
+                        'dependencies': ['snakemake', 'drmaa==0.7.9']}
                 dump(data, requirements_path)
 
             print("commit id: {}".format(master.commit))

solida/playbooks/common.yaml

@@ -11,7 +11,7 @@
     dest: "{{ pipeline_dir }}"
 
 - name: Create Conda virtual environment
-  shell: "mamba create --force -q -n {{ project_name }} \
+  shell: "mamba env create --force -q -n {{ project_name }} \
          --file core_environment.yml"
   args:
     chdir: "{{ pipeline_dir }}"