Scripts

(Supp. Fig 2, 3, 6) assay_filters.R: R code documenting gene set selection process from Malaria Cell Atlas Pf SS2 dataset. Dataset needs to be downloaded from https://www.malariacellatlas.org/downloads/pf-ss2-set1.zip

Data directories

Files generated include:

• breadth_final.csv: breadth labels from 50% expression and DE approach
• m3_combined.csv: primary gene sets. Supp file 2.
• stage_specific.csv: secondary gene sets. Supp file 3.