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Commits on Mar 29, 2017

• Fixed handling of leading and trailing insertions in cigar strings.

  tfenne

  committed
  e434031

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Commits on Mar 14, 2017

• Merge pull request #69 from cbrueffer/misc

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  SilinPavel

  authored
  a900367

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Commits on Mar 13, 2017

• Fix usage message typos and grammar.

  cbrueffer

  committed
  5a7b80a

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Commits on Feb 7, 2017

• Updated version: 1.4.10

  

  Zaal Lyanov

  authored and

  Zaal Lyanov

  committed
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Commits on Feb 6, 2017

• Updated version to 1.4.9

  

  Zaal Lyanov

  authored and

  Zaal Lyanov

  committed
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Commits on Feb 5, 2017

• checking of paired read status was added for method isReadsOverlap

  SilinPavel

  committed
  f34c8d0

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Commits on Feb 2, 2017

• Overlapping reads handling implemented

  

  SilinPavel

  authored and

  Zaal Lyanov

  committed
  feb1c2f

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Commits on Dec 14, 2016

• Update Readme.md

  

  Zaal Lyanov

  authored
  a69332f

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• style -> java 1.8

  

  SilinPavel

  authored and

  Zaal Lyanov

  committed
  d877aac

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Commits on Dec 10, 2016

• change htsjdk version to 2.8

  SilinPavel

  committed
  6698c83

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Commits on Dec 9, 2016

• fix issue for a lot of opened reference files

  SilinPavel

  committed
  1261705

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Commits on Dec 6, 2016

• Updated to version 1.4.7

  

  Zaal Lyanov

  authored and

  Zaal Lyanov

  committed
  c09af2e

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Commits on Dec 5, 2016

• fix for issue 56: VarDict Amplicon Mode throws IndexOutOfBoundsException

  

  Zaal Lyanov

  authored and

  Zaal Lyanov

  committed
  ca0acbb

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• Reduced SAMReader instantiations by confining them into thread local. Now one SAMReader can maintain multiple region queries (sequentially).

  

  Zaal Lyanov

  authored and

  Zaal Lyanov

  committed
  bcef44b

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Commits on Oct 25, 2016

• Updated readme

  Show description for a46f960
  mjafin

  authored
  a46f960

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Commits on Sep 24, 2016

• Bug fixes

  Show description for 59827ce
  zhongwulai

  committed
  59827ce

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Commits on May 20, 2016

• updated verson to 1.4.6

  

  Zaal Lyanov

  authored and

  Zaal Lyanov

  committed
  8c7ea0a

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Commits on May 17, 2016

• Merge pull request #40 from tfenne/tf_fix_indexoutofbounds

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  mjafin

  committed
  d860f02

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Commits on May 11, 2016

• When altering soft-clipping at the end of the read, don't attempt to trim back the read after any soft-clipping was removed.

  tfenne

  committed
  55c42da

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Commits on May 2, 2016

• Update Readme.md

  zhongwulai

  committed
  c96b0e5

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Commits on Mar 16, 2016

• Version 1.4.5 prepared

  

  Zaal Lyanov

  authored and

  Zaal Lyanov

  committed
  9e0365e

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• Applied changes from '5b730eb0df67c86e29436384f409c10008a8202c' revision of perl version

  dnikolaeva

  committed
  48559de

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Commits on Mar 14, 2016

• moved back fixedTheadExecutor

  dnikolaeva

  committed
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Commits on Feb 25, 2016

• set Version to 1.4.5.beta

  

  Zaal Lyanov

  authored and

  Zaal Lyanov

  committed
  7560d66

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Commits on Feb 19, 2016

• little fix

  dnikolaeva

  committed
  400c675

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• Applied changes from 'ccb858dbcc4d279b6cdfa5983eba4f135fc63d04' revision of perl version (fixed issues 7, 26)

  dnikolaeva

  committed
  aca4ff5

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Commits on Jan 29, 2016

• new dist; fixed issue #24

  

  Victor Kirst

  committed
  df7ca58

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• Increased version number

  

  Victor Kirst

  committed
  d83f7b5

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• Fixed error with javadoc generation

  

  Victor Kirst

  committed
  49a3f71

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Commits on Dec 3, 2015

• Changed version number(1.4.3); New dist

  

  Victor Kirst

  committed
  aff541a

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• Fixed issue #22(#19)

  

  Victor Kirst

  committed
  15222d3

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Commits on Nov 19, 2015

• Changed version number(1.4.2); New dist

  

  Victor Kirst

  committed
  ab8deab

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• Fixed issue #21

  

  Victor Kirst

  committed
  3988eec

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• gradle upgrade

  

  Victor Kirst

  committed
  e2812de

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• Changed version of htsjdk

  

  Victor Kirst

  committed
  c235e94

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