diff --git a/cognee-frontend/src/ui/elements/Notebook/Notebook.tsx b/cognee-frontend/src/ui/elements/Notebook/Notebook.tsx index 553c254c94..31c716b964 100644 --- a/cognee-frontend/src/ui/elements/Notebook/Notebook.tsx +++ b/cognee-frontend/src/ui/elements/Notebook/Notebook.tsx @@ -244,67 +244,122 @@ function CellResult({ content }: { content: [] }) { for (const line of content) { try { if (Array.isArray(line)) { + // Insights search returns uncommon graph data structure + if (Array.from(line).length > 0 && Array.isArray(line[0]) && line[0][1]["relationship_name"]) { + parsedContent.push( +
+ reasoning graph + } + graphControls={graphControls} + className="min-h-48" + /> +
+ ); + continue; + } + // @ts-expect-error line can be Array or string for (const item of line) { - if (typeof item === "string") { + if ( + typeof item === "object" && item["search_result"] && (typeof(item["search_result"]) === "string" + || (Array.isArray(item["search_result"]) && typeof(item["search_result"][0]) === "string")) + ) { parsedContent.push( -
-                {item}
-              
- ); - } - if (typeof item === "object" && item["search_result"]) { - parsedContent.push( -
+
query response (dataset: {item["dataset_name"]}) - {item["search_result"]} + {item["search_result"]}
); - } - if (typeof item === "object" && item["graph"] && typeof item["graph"] === "object") { + } else if (typeof(item) === "object" && item["search_result"] && typeof(item["search_result"]) === "object") { parsedContent.push( -
- reasoning graph - } - graphControls={graphControls} - className="min-h-48" - /> -
+
+                {JSON.stringify(item, null, 2)}
+              
+ ) + } else if (typeof(item) === "string") { + parsedContent.push( +
+                {item}
+              
); + } else if (typeof(item) === "object" && !(item["search_result"] || item["graphs"])) { + parsedContent.push( +
+                {JSON.stringify(item, null, 2)}
+              
+ ) + } + + if (typeof item === "object" && item["graphs"] && typeof item["graphs"] === "object") { + Object.entries<{ nodes: []; edges: []; }>(item["graphs"]).forEach(([datasetName, graph]) => { + parsedContent.push( +
+ reasoning graph (datasets: {datasetName}) + } + graphControls={graphControls} + className="min-h-80" + /> +
+ ); + }); } } } - if (typeof(line) === "object" && line["result"]) { + + if (typeof(line) === "object" && line["result"] && typeof(line["result"]) === "string") { const datasets = Array.from( // eslint-disable-next-line @typescript-eslint/no-explicit-any new Set(Object.values(line["datasets"]).map((dataset: any) => dataset.name)) ).join(", "); parsedContent.push( -
+
query response (datasets: {datasets}) - {line["result"]} + {line["result"]}
); - if (line["graphs"]) { + } + if (typeof(line) === "object" && line["graphs"]) { + Object.entries<{ nodes: []; edges: []; }>(line["graphs"]).forEach(([datasetName, graph]) => { parsedContent.push( -
- reasoning graph +
+ reasoning graph (datasets: {datasetName}) } graphControls={graphControls} className="min-h-80" />
); - } + }); + } + + if (typeof(line) === "object" && line["result"] && typeof(line["result"]) === "object") { + parsedContent.push( +
+            {JSON.stringify(line["result"], null, 2)}
+          
+ ) + } + if (typeof(line) === "string") { + parsedContent.push( +
+            {line}
+          
+ ) } } catch (error) { console.error(error); - parsedContent.push(line); + parsedContent.push( +
+          {line}
+        
+ ); } } @@ -317,38 +372,61 @@ function CellResult({ content }: { content: [] }) { }; function transformToVisualizationData(graph: { nodes: [], edges: [] }) { - // Implementation to transform triplet to visualization data - return { nodes: graph.nodes, links: graph.edges, }; +} + +type Triplet = [{ + id: string, + name: string, + type: string, +}, { + relationship_name: string, +}, { + id: string, + name: string, + type: string, +}] + +function transformInsightsGraphData(triplets: Triplet[]) { + const nodes: { + [key: string]: { + id: string, + label: string, + type: string, + } + } = {}; + const links: { + [key: string]: { + source: string, + target: string, + label: string, + } + } = {}; - // const nodes = {}; - // const links = {}; - - // for (const triplet of triplets) { - // nodes[triplet.source.id] = { - // id: triplet.source.id, - // label: triplet.source.attributes.name, - // type: triplet.source.attributes.type, - // attributes: triplet.source.attributes, - // }; - // nodes[triplet.destination.id] = { - // id: triplet.destination.id, - // label: triplet.destination.attributes.name, - // type: triplet.destination.attributes.type, - // attributes: triplet.destination.attributes, - // }; - // links[`${triplet.source.id}_${triplet.attributes.relationship_name}_${triplet.destination.id}`] = { - // source: triplet.source.id, - // target: triplet.destination.id, - // label: triplet.attributes.relationship_name, - // } - // } - - // return { - // nodes: Object.values(nodes), - // links: Object.values(links), - // }; + for (const triplet of triplets) { + nodes[triplet[0].id] = { + id: triplet[0].id, + label: triplet[0].name || triplet[0].id, + type: triplet[0].type, + }; + nodes[triplet[2].id] = { + id: triplet[2].id, + label: triplet[2].name || triplet[2].id, + type: triplet[2].type, + }; + const linkKey = `${triplet[0]["id"]}_${triplet[1]["relationship_name"]}_${triplet[2]["id"]}`; + links[linkKey] = { + source: triplet[0].id, + target: triplet[2].id, + label: triplet[1]["relationship_name"], + }; + } + + return { + nodes: Object.values(nodes), + links: Object.values(links), + }; } diff --git a/cognee/api/v1/search/search.py b/cognee/api/v1/search/search.py index 0e7cb6d85d..dcebce012e 100644 --- a/cognee/api/v1/search/search.py +++ b/cognee/api/v1/search/search.py @@ -22,7 +22,7 @@ async def search( node_type: Optional[Type] = NodeSet, node_name: Optional[List[str]] = None, save_interaction: bool = False, - last_k: Optional[int] = None, + last_k: Optional[int] = 1, only_context: bool = False, use_combined_context: bool = False, ) -> Union[List[SearchResult], CombinedSearchResult]: diff --git a/cognee/infrastructure/databases/vector/embeddings/OllamaEmbeddingEngine.py b/cognee/infrastructure/databases/vector/embeddings/OllamaEmbeddingEngine.py index 29c57ed2ea..cf56dba1fe 100644 --- a/cognee/infrastructure/databases/vector/embeddings/OllamaEmbeddingEngine.py +++ b/cognee/infrastructure/databases/vector/embeddings/OllamaEmbeddingEngine.py @@ -94,11 +94,8 @@ async def _get_embedding(self, prompt: str) -> List[float]: """ Internal method to call the Ollama embeddings endpoint for a single prompt. """ - payload = { - "model": self.model, - "prompt": prompt, - "input": prompt - } + payload = {"model": self.model, "prompt": prompt, "input": prompt} + headers = {} api_key = os.getenv("LLM_API_KEY") if api_key: diff --git a/cognee/modules/search/methods/search.py b/cognee/modules/search/methods/search.py index 0c236d8963..65efafb4c9 100644 --- a/cognee/modules/search/methods/search.py +++ b/cognee/modules/search/methods/search.py @@ -136,12 +136,19 @@ async def search( if os.getenv("ENABLE_BACKEND_ACCESS_CONTROL", "false").lower() == "true": return_value = [] for search_result in search_results: - result, context, datasets = search_result + prepared_search_results = await prepare_search_result(search_result) + + result = prepared_search_results["result"] + graphs = prepared_search_results["graphs"] + context = prepared_search_results["context"] + datasets = prepared_search_results["datasets"] + return_value.append( { - "search_result": result, + "search_result": [result] if result else None, "dataset_id": datasets[0].id, "dataset_name": datasets[0].name, + "graphs": graphs, } ) return return_value @@ -155,14 +162,6 @@ async def search( return return_value[0] else: return return_value - # return [ - # SearchResult( - # search_result=result, - # dataset_id=datasets[min(index, len(datasets) - 1)].id if datasets else None, - # dataset_name=datasets[min(index, len(datasets) - 1)].name if datasets else None, - # ) - # for index, (result, _, datasets) in enumerate(search_results) - # ] async def authorized_search( @@ -208,11 +207,11 @@ async def authorized_search( context = {} datasets: List[Dataset] = [] - for _, search_context, datasets in search_responses: - for dataset in datasets: + for _, search_context, search_datasets in search_responses: + for dataset in search_datasets: context[str(dataset.id)] = search_context - datasets.extend(datasets) + datasets.extend(search_datasets) specific_search_tools = await get_search_type_tools( query_type=query_type, diff --git a/cognee/modules/search/utils/prepare_search_result.py b/cognee/modules/search/utils/prepare_search_result.py index 19cbe07ac7..b854a318d0 100644 --- a/cognee/modules/search/utils/prepare_search_result.py +++ b/cognee/modules/search/utils/prepare_search_result.py @@ -1,8 +1,11 @@ from typing import List, cast +from uuid import uuid5, NAMESPACE_OID from cognee.modules.graph.utils import resolve_edges_to_text from cognee.modules.graph.cognee_graph.CogneeGraphElements import Edge +from cognee.modules.search.types.SearchResult import SearchResultDataset from cognee.modules.search.utils.transform_context_to_graph import transform_context_to_graph +from cognee.modules.search.utils.transform_insights_to_graph import transform_insights_to_graph async def prepare_search_result(search_result): @@ -12,29 +15,48 @@ async def prepare_search_result(search_result): result_graph = None context_texts = {} - if isinstance(context, List) and len(context) > 0 and isinstance(context[0], Edge): + if isinstance(datasets, list) and len(datasets) == 0: + datasets = [ + SearchResultDataset( + id=uuid5(NAMESPACE_OID, "*"), + name="all available datasets", + ) + ] + + if ( + isinstance(context, List) + and len(context) > 0 + and isinstance(context[0], tuple) + and context[0][1].get("relationship_name") + ): + context_graph = transform_insights_to_graph(context) + graphs = { + ", ".join([dataset.name for dataset in datasets]): context_graph, + } + results = None + elif isinstance(context, List) and len(context) > 0 and isinstance(context[0], Edge): context_graph = transform_context_to_graph(context) graphs = { - "*": context_graph, + ", ".join([dataset.name for dataset in datasets]): context_graph, } context_texts = { - "*": await resolve_edges_to_text(context), + ", ".join([dataset.name for dataset in datasets]): await resolve_edges_to_text(context), } elif isinstance(context, str): context_texts = { - "*": context, + ", ".join([dataset.name for dataset in datasets]): context, } elif isinstance(context, List) and len(context) > 0 and isinstance(context[0], str): context_texts = { - "*": "\n".join(cast(List[str], context)), + ", ".join([dataset.name for dataset in datasets]): "\n".join(cast(List[str], context)), } if isinstance(results, List) and len(results) > 0 and isinstance(results[0], Edge): result_graph = transform_context_to_graph(results) return { - "result": result_graph or results[0] if len(results) == 1 else results, + "result": result_graph or results[0] if results and len(results) == 1 else results, "graphs": graphs, "context": context_texts, "datasets": datasets, diff --git a/cognee/modules/search/utils/transform_context_to_graph.py b/cognee/modules/search/utils/transform_context_to_graph.py index 0bc889575c..4fc722dc6b 100644 --- a/cognee/modules/search/utils/transform_context_to_graph.py +++ b/cognee/modules/search/utils/transform_context_to_graph.py @@ -14,7 +14,7 @@ def transform_context_to_graph(context: List[Edge]): if "name" in triplet.node1.attributes else triplet.node1.id, "type": triplet.node1.attributes["type"], - "attributes": triplet.node2.attributes, + "attributes": triplet.node1.attributes, } nodes[triplet.node2.id] = { "id": triplet.node2.id, diff --git a/cognee/modules/search/utils/transform_insights_to_graph.py b/cognee/modules/search/utils/transform_insights_to_graph.py new file mode 100644 index 0000000000..e01a444cdd --- /dev/null +++ b/cognee/modules/search/utils/transform_insights_to_graph.py @@ -0,0 +1,28 @@ +from typing import Dict, List, Tuple + + +def transform_insights_to_graph(context: List[Tuple[Dict, Dict, Dict]]): + nodes = {} + edges = {} + + for triplet in context: + nodes[triplet[0]["id"]] = { + "id": triplet[0]["id"], + "label": triplet[0]["name"] if "name" in triplet[0] else triplet[0]["id"], + "type": triplet[0]["type"], + } + nodes[triplet[2]["id"]] = { + "id": triplet[2]["id"], + "label": triplet[2]["name"] if "name" in triplet[2] else triplet[2]["id"], + "type": triplet[2]["type"], + } + edges[f"{triplet[0]['id']}_{triplet[1]['relationship_name']}_{triplet[2]['id']}"] = { + "source": triplet[0]["id"], + "target": triplet[2]["id"], + "label": triplet[1]["relationship_name"], + } + + return { + "nodes": list(nodes.values()), + "edges": list(edges.values()), + } diff --git a/cognee/tasks/temporal_graph/models.py b/cognee/tasks/temporal_graph/models.py index ef5cd42c97..8e1fd56581 100644 --- a/cognee/tasks/temporal_graph/models.py +++ b/cognee/tasks/temporal_graph/models.py @@ -3,12 +3,17 @@ class Timestamp(BaseModel): - year: int = Field(..., ge=1, le=9999) - month: int = Field(..., ge=1, le=12) - day: int = Field(..., ge=1, le=31) - hour: int = Field(..., ge=0, le=23) - minute: int = Field(..., ge=0, le=59) - second: int = Field(..., ge=0, le=59) + year: int = Field( + ..., + ge=1, + le=9999, + description="Always required. If only a year is known, use it.", + ) + month: int = Field(1, ge=1, le=12, description="If unknown, default to 1") + day: int = Field(1, ge=1, le=31, description="If unknown, default to 1") + hour: int = Field(0, ge=0, le=23, description="If unknown, default to 0") + minute: int = Field(0, ge=0, le=59, description="If unknown, default to 0") + second: int = Field(0, ge=0, le=59, description="If unknown, default to 0") class Interval(BaseModel): diff --git a/cognee/tests/cli_tests/cli_unit_tests/test_cli_main.py b/cognee/tests/cli_tests/cli_unit_tests/test_cli_main.py index 44f23ea5c0..1ad8eb09e8 100644 --- a/cognee/tests/cli_tests/cli_unit_tests/test_cli_main.py +++ b/cognee/tests/cli_tests/cli_unit_tests/test_cli_main.py @@ -49,7 +49,7 @@ def test_create_parser(self): def test_main_no_command(self, mock_create_parser): """Test main function when no command is provided""" mock_parser = MagicMock() - mock_parser.parse_args.return_value = MagicMock(command=None) + mock_parser.parse_args.return_value = MagicMock(command=None, spec={}) mock_create_parser.return_value = (mock_parser, {}) result = main() @@ -64,7 +64,7 @@ def test_main_with_valid_command(self, mock_create_parser): mock_command.execute.return_value = None mock_parser = MagicMock() - mock_args = MagicMock(command="test") + mock_args = MagicMock(command="test", spec={}) mock_parser.parse_args.return_value = mock_args mock_create_parser.return_value = (mock_parser, {"test": mock_command}) @@ -84,7 +84,7 @@ def test_main_with_command_exception(self, mock_debug, mock_create_parser): mock_command.execute.side_effect = CliCommandException("Test error", error_code=2) mock_parser = MagicMock() - mock_args = MagicMock(command="test") + mock_args = MagicMock(command="test", spec={}) mock_parser.parse_args.return_value = mock_args mock_create_parser.return_value = (mock_parser, {"test": mock_command}) @@ -103,7 +103,7 @@ def test_main_with_generic_exception(self, mock_debug, mock_create_parser): mock_command.execute.side_effect = Exception("Generic error") mock_parser = MagicMock() - mock_args = MagicMock(command="test") + mock_args = MagicMock(command="test", spec={}) mock_parser.parse_args.return_value = mock_args mock_create_parser.return_value = (mock_parser, {"test": mock_command}) @@ -126,7 +126,7 @@ def test_main_debug_mode_reraises_exception(self, mock_debug, mock_create_parser mock_command.execute.side_effect = test_exception mock_parser = MagicMock() - mock_args = MagicMock(command="test") + mock_args = MagicMock(command="test", spec={}) mock_parser.parse_args.return_value = mock_args mock_create_parser.return_value = (mock_parser, {"test": mock_command}) diff --git a/cognee/tests/test_temporal_graph.py b/cognee/tests/test_temporal_graph.py index 675a01689c..4501deed88 100644 --- a/cognee/tests/test_temporal_graph.py +++ b/cognee/tests/test_temporal_graph.py @@ -97,7 +97,7 @@ async def main(): f"Expected exactly one DocumentChunk, but found {type_counts.get('DocumentChunk', 0)}" ) - assert type_counts.get("Entity", 0) >= 20, ( + assert type_counts.get("Entity", 0) >= 10, ( f"Expected multiple entities (assert is set to 20), but found {type_counts.get('Entity', 0)}" ) @@ -105,52 +105,24 @@ async def main(): f"Expected multiple entity types, but found {type_counts.get('EntityType', 0)}" ) - assert type_counts.get("Event", 0) >= 20, ( + assert type_counts.get("Event", 0) >= 10, ( f"Expected multiple events (assert is set to 20), but found {type_counts.get('Event', 0)}" ) - assert type_counts.get("Timestamp", 0) >= 20, ( - f"Expected multiple timestamps (assert is set to 20), but found {type_counts.get('Timestamp', 0)}" + assert type_counts.get("Timestamp", 0) >= 10, ( + f"Expected multiple timestamps (assert is set to 10), but found {type_counts.get('Timestamp', 0)}" ) - assert type_counts.get("Interval", 0) >= 2, ( - f"Expected multiple intervals, but found {type_counts.get('Interval', 0)}" - ) - - assert edge_type_counts.get("contains", 0) >= 20, ( + assert edge_type_counts.get("contains", 0) >= 10, ( f"Expected multiple 'contains' edge, but found {edge_type_counts.get('contains', 0)}" ) - assert edge_type_counts.get("is_a", 0) >= 20, ( + assert edge_type_counts.get("is_a", 0) >= 10, ( f"Expected multiple 'is_a' edge, but found {edge_type_counts.get('is_a', 0)}" ) - assert edge_type_counts.get("during", 0) == type_counts.get("Interval", 0), ( - "Expected the same amount of during and interval objects in the graph" - ) - - assert edge_type_counts.get("during", 0) == type_counts.get("Interval", 0), ( - "Expected the same amount of during and interval objects in the graph" - ) - - assert edge_type_counts.get("time_from", 0) == type_counts.get("Interval", 0), ( - "Expected the same amount of time_from and interval objects in the graph" - ) - - assert edge_type_counts.get("time_to", 0) == type_counts.get("Interval", 0), ( - "Expected the same amount of time_to and interval objects in the graph" - ) - retriever = TemporalRetriever() - result_before = await retriever.extract_time_from_query("What happened before 1890?") - - assert result_before[0] is None - - result_after = await retriever.extract_time_from_query("What happened after 1891?") - - assert result_after[1] is None - result_between = await retriever.extract_time_from_query("What happened between 1890 and 1900?") assert result_between[1] diff --git a/poetry.lock b/poetry.lock index de2be77681..873ee30568 100644 --- a/poetry.lock +++ b/poetry.lock @@ -246,30 +246,30 @@ files = [ [[package]] name = "anthropic" -version = "0.26.1" +version = "0.67.0" description = "The official Python library for the anthropic API" optional = true -python-versions = ">=3.7" +python-versions = ">=3.8" groups = ["main"] markers = "extra == \"anthropic\" or extra == \"deepeval\"" files = [ - {file = "anthropic-0.26.1-py3-none-any.whl", hash = "sha256:2812b9b250b551ed8a1f0a7e6ae3f005654098994f45ebca5b5808bd154c9628"}, - {file = "anthropic-0.26.1.tar.gz", hash = "sha256:26680ff781a6f678a30a1dccd0743631e602b23a47719439ffdef5335fa167d8"}, + {file = "anthropic-0.67.0-py3-none-any.whl", hash = "sha256:f80a81ec1132c514215f33d25edeeab1c4691ad5361b391ebb70d528b0605b55"}, + {file = "anthropic-0.67.0.tar.gz", hash = "sha256:d1531b210ea300c73423141d29bcee20fcd24ef9f426f6437c0a5d93fc98fb8e"}, ] [package.dependencies] anyio = ">=3.5.0,<5" distro = ">=1.7.0,<2" -httpx = ">=0.23.0,<1" -jiter = ">=0.1.0,<1" +httpx = ">=0.25.0,<1" +jiter = ">=0.4.0,<1" pydantic = ">=1.9.0,<3" sniffio = "*" -tokenizers = ">=0.13.0" -typing-extensions = ">=4.7,<5" +typing-extensions = ">=4.10,<5" [package.extras] +aiohttp = ["aiohttp", "httpx-aiohttp (>=0.1.8)"] bedrock = ["boto3 (>=1.28.57)", "botocore (>=1.31.57)"] -vertex = ["google-auth (>=2,<3)"] +vertex = ["google-auth[requests] (>=2,<3)"] [[package]] name = "anyio" @@ -386,6 +386,25 @@ types-python-dateutil = ">=2.8.10" doc = ["doc8", "sphinx (>=7.0.0)", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx_rtd_theme (>=1.3.0)"] test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (==3.*)"] +[[package]] +name = "asgiref" +version = "3.9.1" +description = "ASGI specs, helper code, and adapters" +optional = true +python-versions = ">=3.9" +groups = ["main"] +markers = "extra == \"chromadb\"" +files = [ + {file = "asgiref-3.9.1-py3-none-any.whl", hash = "sha256:f3bba7092a48005b5f5bacd747d36ee4a5a61f4a269a6df590b43144355ebd2c"}, + {file = "asgiref-3.9.1.tar.gz", hash = "sha256:a5ab6582236218e5ef1648f242fd9f10626cfd4de8dc377db215d5d5098e3142"}, +] + +[package.dependencies] +typing_extensions = {version = ">=4", markers = "python_version < \"3.11\""} + +[package.extras] +tests = ["mypy (>=1.14.0)", "pytest", "pytest-asyncio"] + [[package]] name = "astroid" version = "3.3.11" @@ -775,6 +794,30 @@ urllib3 = {version = ">=1.25.4,<2.2.0 || >2.2.0,<3", markers = "python_version > [package.extras] crt = 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extra == \"chromadb\"" files = [ {file = "websocket_client-1.8.0-py3-none-any.whl", hash = "sha256:17b44cc997f5c498e809b22cdf2d9c7a9e71c02c8cc2b6c56e7c2d1239bfa526"}, {file = "websocket_client-1.8.0.tar.gz", hash = "sha256:3239df9f44da632f96012472805d40a23281a991027ce11d2f45a6f24ac4c3da"}, @@ -11590,7 +11576,7 @@ description = "Zstandard bindings for Python" optional = true python-versions = ">=3.9" groups = ["main"] -markers = "extra == \"neptune\" or extra == \"langchain\" or extra == \"chromadb\"" +markers = "extra == \"neptune\" or extra == \"langchain\"" files = [ {file = "zstandard-0.24.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:af1394c2c5febc44e0bbf0fc6428263fa928b50d1b1982ce1d870dc793a8e5f4"}, {file = "zstandard-0.24.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:5e941654cef13a1d53634ec30933722eda11f44f99e1d0bc62bbce3387580d50"}, @@ -11728,4 +11714,4 @@ posthog = ["posthog"] [metadata] lock-version = "2.1" python-versions = ">=3.10,<=3.13" -content-hash = 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name = "aiofiles" },