diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
index bdb3d66..5ad6eba 100644
--- a/.github/workflows/publish.yml
+++ b/.github/workflows/publish.yml
@@ -10,11 +10,11 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v5
     - name: Set up Python
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v6
       with:
-        python-version: '3.10'
+        python-version: '3.12'
     - name: Install Poetry
       run: |
         python -m pip install --upgrade pip
diff --git a/.github/workflows/ruff.yml b/.github/workflows/ruff.yml
index 17774bc..e4dd382 100644
--- a/.github/workflows/ruff.yml
+++ b/.github/workflows/ruff.yml
@@ -4,5 +4,7 @@ jobs:
   ruff:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
-      - uses: chartboost/ruff-action@v1
\ No newline at end of file
+      - uses: actions/checkout@v5
+      - uses: astral-sh/ruff-action@v3
+      - run: ruff check --fix
+      - run: ruff format
\ No newline at end of file
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
index 4b4b0ec..bd2ae6c 100644
--- a/.github/workflows/tests.yml
+++ b/.github/workflows/tests.yml
@@ -15,12 +15,12 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ["3.10"]  # Add more Python versions here, e.g. "3.9", "3.11"
+        python-version: ["3.10", "3.12"]
 
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v5
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v6
       with:
         python-version: ${{ matrix.python-version }}
     - name: Install Poetry
@@ -35,7 +35,7 @@ jobs:
       run: |
         .venv/bin/pytest --cov-report=xml
     - name: Upload coverage report to Codecov
-      uses: codecov/codecov-action@v4
+      uses: codecov/codecov-action@v5
       with:
         token: ${{ secrets.CODECOV_TOKEN }}
         file: ./coverage.xml
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 1da5c61..206d612 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -8,7 +8,7 @@ exclude: |
   )$
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v6.0.0
     hooks:
       - id: check-merge-conflict
       - id: check-added-large-files
@@ -18,8 +18,8 @@ repos:
       - id: check-yaml
       - id: requirements-txt-fixer
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: 'v0.1.8'
+    rev: 'v0.14.0'
     hooks:
-      - id: ruff
+      - id: ruff-check
         args: [ --fix ]
       - id: ruff-format
diff --git a/README.md b/README.md
index 70144b7..ab446cf 100644
--- a/README.md
+++ b/README.md
@@ -31,7 +31,7 @@
 Install the `jax-sph` library from PyPI as
 
 ```bash
-python3.10 -m venv venv
+python3.12 -m venv venv
 source venv/bin/activate
 pip install jax-sph
 ```
@@ -39,7 +39,7 @@ pip install jax-sph
 By default `jax-sph` is installed without GPU support. If you have a CUDA-capable GPU, follow the instructions in the [GPU support](#gpu-support) section.
 
 ### Clone
-We recommend using a `poetry` or `python3-venv` environment.
+We recommend using a `poetry` or `python3-venv` environment. Last tested with python3.10 + jax[cpu]==0.6.2 and python3.12 + jax[cpu]==0.7.2.
 
 **Using Poetry**
 ```bash
@@ -51,7 +51,7 @@ Later, you just need to `source .venv/bin/activate` to activate the environment.
 
 **Using `python3-venv`**
 ```bash
-python3 -m venv venv
+python3.12 -m venv venv
 source venv/bin/activate
 pip install -r requirements.txt
 pip install -e . # to install jax_sph in interactive mode
@@ -62,7 +62,7 @@ Later, you just need to `source venv/bin/activate` to activate the environment.
 If you want to use a CUDA GPU, you first need a running Nvidia driver. And then just follow the instructions [here](https://jax.readthedocs.io/en/latest/installation.html). The whole process could look like this:
 ```bash
 source .venv/bin/activate
-pip install -U "jax[cuda12]==0.4.29"
+pip install -U "jax[cuda12]" # specify version as "jax[cuda12]==0.6.2"
 ```
 
 ## Getting Started
diff --git a/cases/ht.py b/cases/ht.py
index ea17db7..57f0195 100644
--- a/cases/ht.py
+++ b/cases/ht.py
@@ -1,6 +1,5 @@
 "Heat Transfer over a flat plate setup"
 
-
 import jax.numpy as jnp
 import numpy as np
 from omegaconf import DictConfig
diff --git a/cases/ldc.py b/cases/ldc.py
index 478f44b..dd5d619 100644
--- a/cases/ldc.py
+++ b/cases/ldc.py
@@ -1,6 +1,5 @@
 """Lid-driven cavity case setup"""
 
-
 import jax.numpy as jnp
 import numpy as np
 from omegaconf import DictConfig
diff --git a/cases/tgv.py b/cases/tgv.py
index 80f008c..5a87593 100644
--- a/cases/tgv.py
+++ b/cases/tgv.py
@@ -1,6 +1,5 @@
 """Taylor-Green case setup"""
 
-
 import jax.numpy as jnp
 import numpy as np
 from omegaconf import DictConfig
diff --git a/docs/requirements.txt b/docs/requirements.txt
index 09f9724..01e3f26 100644
--- a/docs/requirements.txt
+++ b/docs/requirements.txt
@@ -1,6 +1,6 @@
 absl-py>=2.1.0
 h5py
-jax[cpu]==0.4.29
+jax[cpu]==0.6.2
 jraph>=0.0.6.dev0
 omegaconf
 pandas
diff --git a/jax_sph/case_setup.py b/jax_sph/case_setup.py
index a05a563..4772bb5 100644
--- a/jax_sph/case_setup.py
+++ b/jax_sph/case_setup.py
@@ -191,7 +191,7 @@ def initialize(self):
                 assert state[k][mask].shape == _state[k][_mask].shape, ValueError(
                     f"Shape mismatch for key {k} in state0 file."
                 )
-                state[k][mask] = _state[k][_mask]
+                state[k] = state[k].at[mask].set(_state[k][_mask])
 
         # the following arguments are needed for dataset generation
         cfg.case.c_ref, cfg.case.p_ref, cfg.case.p_bg = c_ref, p_ref, p_bg
diff --git a/jax_sph/defaults.py b/jax_sph/defaults.py
index 121c693..ed66400 100644
--- a/jax_sph/defaults.py
+++ b/jax_sph/defaults.py
@@ -172,9 +172,9 @@ def check_cfg(cfg: DictConfig) -> None:
     assert cfg.solver.dt is None or cfg.solver.dt > 0.0, "dt must be > 0.0."
     assert cfg.solver.t_end > 0.0, "t_end must be > 0.0."
     assert cfg.solver.artificial_alpha >= 0.0, "artificial_alpha must be >= 0.0."
-    assert (
-        cfg.solver.eta_limiter == -1 or cfg.solver.eta_limiter >= 0
-    ), "eta_limiter must be -1 or >0."
+    assert cfg.solver.eta_limiter == -1 or cfg.solver.eta_limiter >= 0, (
+        "eta_limiter must be -1 or >0."
+    )
     assert cfg.solver.kappa >= 0.0, "kappa must be >= 0.0."
 
     assert cfg.kernel.name in ["QSK", "WC2K"], "Kernel must be one of 'QSK' or 'WC2K'."
@@ -189,7 +189,7 @@ def check_cfg(cfg: DictConfig) -> None:
     assert cfg.nl.backend in _nl_backends, f"nl_backend must be in {_nl_backends}."
 
     _io_trite_type = ["h5", "vtk"]
-    assert all(
-        [w in _io_trite_type for w in cfg.io.write_type]
-    ), f"write_type must be in {_io_trite_type}."
+    assert all([w in _io_trite_type for w in cfg.io.write_type]), (
+        f"write_type must be in {_io_trite_type}."
+    )
     assert cfg.io.write_every > 0, "write_every must be > 0."
diff --git a/jax_sph/eos.py b/jax_sph/eos.py
index 9d8e5cb..572c9c1 100644
--- a/jax_sph/eos.py
+++ b/jax_sph/eos.py
@@ -1,6 +1,5 @@
 """Equation of state."""
 
-
 from abc import ABC, abstractmethod
 
 
diff --git a/jax_sph/jax_md/partition.py b/jax_sph/jax_md/partition.py
index 97cc911..c8d9659 100644
--- a/jax_sph/jax_md/partition.py
+++ b/jax_sph/jax_md/partition.py
@@ -25,7 +25,7 @@
 import jraph
 import numpy as onp
 from absl import logging
-from jax import eval_shape, jit, lax, ops, tree_map, vmap
+from jax import eval_shape, jit, lax, ops, tree, vmap
 from jax.core import ShapedArray
 
 from jax_sph.jax_md import dataclasses, space, util
@@ -103,9 +103,9 @@ def kwarg_buffers(self):
 @dataclasses.dataclass
 class CellListFns:
     allocate: Callable[..., CellList] = dataclasses.static_field()
-    update: Callable[
-        [Array, Union[CellList, int]], CellList
-    ] = dataclasses.static_field()
+    update: Callable[[Array, Union[CellList, int]], CellList] = (
+        dataclasses.static_field()
+    )
 
     def __iter__(self):
         return iter((self.allocate, self.update))
@@ -492,9 +492,7 @@ def __str__(self) -> str:
             return "Partition Error: Cell size too small"
 
         if jnp.any(self.code & PEC.MALFORMED_BOX):
-            return (
-                "Partition Error: Incorrect box format. Expecting upper " "triangular."
-            )
+            return "Partition Error: Incorrect box format. Expecting upper triangular."
 
         raise ValueError(f"Unexpected Error Code {self.code}.")
 
@@ -523,8 +521,7 @@ def _displacement_or_metric_to_metric_sq(
         except ValueError:
             continue
     raise ValueError(
-        "Canonicalize displacement not implemented for spatial dimension larger"
-        "than 4."
+        "Canonicalize displacement not implemented for spatial dimension larger than 4."
     )
 
 
@@ -654,9 +651,9 @@ class NeighborList:
     format: NeighborListFormat = dataclasses.static_field()
     cell_size: Optional[float] = dataclasses.static_field()
     cell_list_fn: Callable[[Array, CellList], CellList] = dataclasses.static_field()
-    update_fn: Callable[
-        [Array, "NeighborList"], "NeighborList"
-    ] = dataclasses.static_field()
+    update_fn: Callable[[Array, "NeighborList"], "NeighborList"] = (
+        dataclasses.static_field()
+    )
 
     def update(self, position: Array, **kwargs) -> "NeighborList":
         return self.update_fn(position, self, **kwargs)
@@ -1082,10 +1079,10 @@ def pad(x):
         padding = jnp.zeros((1,) + x.shape[1:], dtype=x.dtype)
         return jnp.concatenate((x, padding), axis=0)
 
-    nodes = tree_map(pad, nodes)
+    nodes = tree.map(pad, nodes)
 
     # Pad the globals to add one fictitious global.
-    globals = tree_map(pad, globals)
+    globals = tree.map(pad, globals)
 
     # If there is an additional mask, reorder the edges.
     if mask is not None:
@@ -1099,7 +1096,7 @@ def pad(x):
         def reorder_edges(x):
             return jnp.zeros_like(x).at[index].set(x)
 
-        edges = tree_map(reorder_edges, edges)
+        edges = tree.map(reorder_edges, edges)
         mask = receivers < N
 
     return jraph.GraphsTuple(
diff --git a/jax_sph/jax_md/space.py b/jax_sph/jax_md/space.py
index b088630..b5a33a0 100644
--- a/jax_sph/jax_md/space.py
+++ b/jax_sph/jax_md/space.py
@@ -85,7 +85,7 @@ def inverse(box: Box) -> Box:
     elif box.ndim == 2:
         return jnp.linalg.inv(box)
     raise ValueError(
-        ("Box must be either: a scalar, a vector, or a matrix. " f"Found {box}.")
+        (f"Box must be either: a scalar, a vector, or a matrix. Found {box}.")
     )
 
 
@@ -116,7 +116,7 @@ def raw_transform(box: Box, R: Array) -> Array:
         right_indices = free_indices + "i"
         return jnp.einsum(f"ij,{left_indices}->{right_indices}", box, R)
     raise ValueError(
-        ("Box must be either: a scalar, a vector, or a matrix. " f"Found {box}.")
+        (f"Box must be either: a scalar, a vector, or a matrix. Found {box}.")
     )
 
 
@@ -473,6 +473,5 @@ def canonicalize_displacement_or_metric(displacement_or_metric):
         except ValueError:
             continue
     raise ValueError(
-        "Canonicalize displacement not implemented for spatial dimension larger"
-        "than 4."
+        "Canonicalize displacement not implemented for spatial dimension larger than 4."
     )
diff --git a/notebooks/iclr24_grads.ipynb b/notebooks/iclr24_grads.ipynb
index dcd6ad2..31d7095 100644
--- a/notebooks/iclr24_grads.ipynb
+++ b/notebooks/iclr24_grads.ipynb
@@ -47,12 +47,12 @@
     "from jax_sph.defaults import defaults\n",
     "from jax_sph.integrator import si_euler\n",
     "from jax_sph.partition import neighbor_list\n",
-    "from jax_sph.solver import WCSPH\n"
+    "from jax_sph.solver import WCSPH"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -61,7 +61,7 @@
     "WARMUP = 10\n",
     "N = 20\n",
     "\n",
-    "dx = 1.0 / N0.000367\n",
+    "dx = 1.0 / N\n",
     "dt = 0.0\n",
     "\n",
     "FD_EPS = 0.001 * dx"
@@ -137,8 +137,7 @@
     "state0s = {}\n",
     "\n",
     "for ind, case_id in enumerate(CASES):\n",
-    "\n",
-    "    cfg = OmegaConf.create({\"config\": \"../cases/\"+case_id.lower()+\".yaml\"})\n",
+    "    cfg = OmegaConf.create({\"config\": \"../cases/\" + case_id.lower() + \".yaml\"})\n",
     "    cfg = OmegaConf.merge(defaults.copy(), OmegaConf.load(cfg.config), cfg)\n",
     "    cfg.seed = 0\n",
     "    cfg.case.dx = dx\n",
@@ -147,9 +146,9 @@
     "\n",
     "    Case = load_case(os.path.dirname(cfg.config), cfg.case.source)\n",
     "    case = Case(cfg)\n",
-    "    (\n",
-    "        cfg, box_size, state, g_ext_fn, bc_fn, nw_fn, eos_fn, _, displ_fn, shift_fn\n",
-    "    ) = case.initialize()\n",
+    "    (cfg, box_size, state, g_ext_fn, bc_fn, nw_fn, eos_fn, _, displ_fn, shift_fn) = (\n",
+    "        case.initialize()\n",
+    "    )\n",
     "\n",
     "    dt = cfg.solver.dt\n",
     "\n",
@@ -258,16 +257,24 @@
     "    # https://github.com/tumaer/jax-sph/tree/v0.0.1\n",
     "    axs[0].scatter(state0[\"r\"][:, 0], state0[\"r\"][:, 1], s=10)\n",
     "    axs[0].quiver(\n",
-    "        state0[\"r\"][:, 0], state0[\"r\"][:, 1], \n",
-    "        sph_grad[:, 0], sph_grad[:, 1], \n",
-    "        scale=15, width=0.005, headwidth=3, \n",
+    "        state0[\"r\"][:, 0],\n",
+    "        state0[\"r\"][:, 1],\n",
+    "        sph_grad[:, 0],\n",
+    "        sph_grad[:, 1],\n",
+    "        scale=15,\n",
+    "        width=0.005,\n",
+    "        headwidth=3,\n",
     "    )\n",
     "    axs[0].set_title(\"Autograd\", fontsize=26)\n",
     "    axs[1].scatter(state0[\"r\"][:, 0], state0[\"r\"][:, 1], s=10)\n",
     "    axs[1].quiver(\n",
-    "        state0[\"r\"][:, 0], state0[\"r\"][:, 1], \n",
-    "        fd_grad[:, 0], fd_grad[:, 1], \n",
-    "        scale=15, width=0.005, headwidth=3, \n",
+    "        state0[\"r\"][:, 0],\n",
+    "        state0[\"r\"][:, 1],\n",
+    "        fd_grad[:, 0],\n",
+    "        fd_grad[:, 1],\n",
+    "        scale=15,\n",
+    "        width=0.005,\n",
+    "        headwidth=3,\n",
     "    )\n",
     "    axs[1].set_title(\"Finite differences\", fontsize=26)\n",
     "    axs[0].set_xticks([])\n",
diff --git a/notebooks/iclr24_inverse.ipynb b/notebooks/iclr24_inverse.ipynb
index ade08e4..f900c23 100644
--- a/notebooks/iclr24_inverse.ipynb
+++ b/notebooks/iclr24_inverse.ipynb
@@ -57,7 +57,7 @@
     "from jax_sph.jax_md.partition import Sparse\n",
     "from jax_sph.simulate import simulate\n",
     "from jax_sph.solver import WCSPH\n",
-    "from jax_sph.utils import Tag\n"
+    "from jax_sph.utils import Tag"
    ]
   },
   {
@@ -126,19 +126,21 @@
    "outputs": [],
    "source": [
     "# Optimization Algorithm:\n",
-    "# Step 1: Define Loss Function which takes in the random initial position and other \n",
+    "# Step 1: Define Loss Function which takes in the random initial position and other\n",
     "#   solver parameters and runs the forward simulation\n",
     "# Step 2: Load the target ground truth position from the paraview file\n",
     "# Step 3: Inside the loss function, compute the mse between the target and predicted r\n",
     "# Step 4: Return the loss and the state computed from forward pass.\n",
-    "# Step 5: Define the optimization loop, where the initial state is updated using the \n",
+    "# Step 5: Define the optimization loop, where the initial state is updated using the\n",
     "#   gradients of the loss: init_state[r] = init_state[r] - learning_rate * grads[-1]\n",
     "\n",
-    "def optimization_case_setup(cfg):\n",
     "\n",
+    "def optimization_case_setup(cfg):\n",
     "    Case = load_case(os.path.dirname(cfg.config), cfg.case.source)\n",
     "    case = Case(cfg)\n",
-    "    cfg, box_size, state, g_ext_fn, bc_fn, nw_fn, eos_fn, _, displ_fn, shift_fn = case.initialize()\n",
+    "    cfg, box_size, state, g_ext_fn, bc_fn, nw_fn, eos_fn, _, displ_fn, shift_fn = (\n",
+    "        case.initialize()\n",
+    "    )\n",
     "\n",
     "    optim_init_state = state\n",
     "    # NOTE make it easier on us\n",
@@ -203,9 +205,7 @@
     "\n",
     "\n",
     "def forward_simulation(advance, state, neighbors, neighbor_fn, num_particles, cfg):\n",
-    "\n",
     "    for step in range(cfg.solver.sequence_length):\n",
-    "\n",
     "        state_, neighbors_ = advance(cfg.solver.dt, state, neighbors)\n",
     "\n",
     "        # Check whether the edge list is too small and if so, create longer one\n",
@@ -310,7 +310,6 @@
     "\n",
     "    _, final_state = states\n",
     "\n",
-    "\n",
     "    advance, optim_init_state, neighbors, neighbor_fn, num_particles = (\n",
     "        optimization_case_setup(cfg)\n",
     "    )\n",
@@ -323,13 +322,12 @@
     "    loss_fn = loss_fn_wrapper(advance, cfg)\n",
     "\n",
     "    write_h5(optim_init_state, f\"data/optim_{case}_init.h5\")\n",
-    "    \n",
+    "\n",
     "    best_loss = 1e6\n",
     "    best_state = state\n",
     "    mask = state[\"tag\"] == Tag.FLUID\n",
     "\n",
     "    for optimization_step in range(STEPS):\n",
-    "\n",
     "        loss, grad = jax.value_and_grad(fun=loss_fn, allow_int=True)(\n",
     "            state, neighbors, neighbor_fn, num_particles, target_position\n",
     "        )\n",
@@ -341,7 +339,7 @@
     "            best_state = copy.deepcopy(state)\n",
     "\n",
     "        print(f\"Step {optimization_step}, Loss: {loss:.3f}\")\n",
-    "    \n",
+    "\n",
     "    print(f\"Best Loss: {best_loss:.3f}\")\n",
     "\n",
     "    write_h5(best_state, f\"data/optim_{case}_final.h5\")"
diff --git a/notebooks/iclr24_sitl.ipynb b/notebooks/iclr24_sitl.ipynb
index 19f680d..59ca9cf 100644
--- a/notebooks/iclr24_sitl.ipynb
+++ b/notebooks/iclr24_sitl.ipynb
@@ -69,7 +69,8 @@
    "outputs": [],
    "source": [
     "# 2. Learned only (L=1) - takes around 10h\n",
-    "! python iclr24_sitl.py model.name=gns train.noise_std=0.0003 train.optimizer.lr_start=0.001\n",
+    "! python iclr24_sitl.py \\\n",
+    "    model.name=gns train.noise_std=0.0003 train.optimizer.lr_start=0.001\n",
     "# 3. SitL (L=3) - takes around a day\n",
     "! python iclr24_sitl.py"
    ]
@@ -90,10 +91,11 @@
    "outputs": [],
    "source": [
     "# 1. Solver only (L=3)\n",
-    "! python iclr24_sitl.py model.gnn_prefactor=0.0 \\\n",
-    "    mode=infer eval.infer.n_extrap_steps=480 eval.test=true\n",
+    "! python iclr24_sitl.py \\\n",
+    "    model.gnn_prefactor=0.0 mode=infer eval.infer.n_extrap_steps=480 eval.test=true\n",
     "# 2. Learned only (L=1)\n",
-    "! python iclr24_sitl.py model.name=gns train.noise_std=0.0003 train.optimizer.lr_start=0.001 \\\n",
+    "! python iclr24_sitl.py \\\n",
+    "    model.name=gns train.noise_std=0.0003 train.optimizer.lr_start=0.001 \\\n",
     "    mode=infer eval.infer.n_extrap_steps=480 eval.test=true\n",
     "# 3. SitL (L=3)\n",
     "! python iclr24_sitl.py \\\n",
@@ -149,12 +151,16 @@
     "for suffix in [\"solver\", \"gns\", \"sitl\"]:\n",
     "    data[suffix] = {}\n",
     "    for step in [0, 250, 500]:\n",
-    "        pv_dataset = pv.read(os.path.join(\"../rollouts\", suffix, f\"rollout_0_{step}.vtk\"))\n",
-    "        pv_dataset1 = pv.read(os.path.join(\"../rollouts\", suffix, f\"rollout_0_{step + 1}.vtk\"))\n",
+    "        pv_dataset = pv.read(\n",
+    "            os.path.join(\"../rollouts\", suffix, f\"rollout_0_{step}.vtk\")\n",
+    "        )\n",
+    "        pv_dataset1 = pv.read(\n",
+    "            os.path.join(\"../rollouts\", suffix, f\"rollout_0_{step + 1}.vtk\")\n",
+    "        )\n",
     "        r = np.array(pv_dataset.points)\n",
     "        r1 = np.array(pv_dataset1.points)\n",
-    "        v = displacement_fn_vmap(r1[:,:2], r[:,:2])\n",
-    "        v = np.sqrt(v[:,0]**2 + v[:,1]**2)\n",
+    "        v = displacement_fn_vmap(r1[:, :2], r[:, :2])\n",
+    "        v = np.sqrt(v[:, 0] ** 2 + v[:, 1] ** 2)\n",
     "        v /= metadata[\"dt\"] * metadata[\"write_every\"]\n",
     "        data[suffix][step] = {\"r\": r, \"v\": v}"
    ]
@@ -205,12 +211,20 @@
     "        ax.scatter(r[:, 1], r[:, 0], vmin=0.0, vmax=1.0, c=v, cmap=\"turbo\", s=10)\n",
     "        ax.set_xlim(metadata[\"bounds\"][1])\n",
     "        ax.set_ylim(metadata[\"bounds\"][0])\n",
-    "        ax.set_aspect('equal')\n",
+    "        ax.set_aspect(\"equal\")\n",
     "        ax.set_xticks([])\n",
     "        ax.set_yticks([])\n",
-    "        ax.text(0.98, 0.04, f\"{step}\", color=\"black\", \n",
-    "                bbox=dict(facecolor=\"white\", edgecolor=\"black\"), \n",
-    "                ha=\"right\", va=\"bottom\", transform=ax.transAxes, fontsize=24)\n",
+    "        ax.text(\n",
+    "            0.98,\n",
+    "            0.04,\n",
+    "            f\"{step}\",\n",
+    "            color=\"black\",\n",
+    "            bbox=dict(facecolor=\"white\", edgecolor=\"black\"),\n",
+    "            ha=\"right\",\n",
+    "            va=\"bottom\",\n",
+    "            transform=ax.transAxes,\n",
+    "            fontsize=24,\n",
+    "        )\n",
     "        ax.grid()\n",
     "        # add colorbar underneath the image\n",
     "        fig.tight_layout()\n",
diff --git a/notebooks/kernel_plots.ipynb b/notebooks/kernel_plots.ipynb
index 21865e1..16f00d3 100644
--- a/notebooks/kernel_plots.ipynb
+++ b/notebooks/kernel_plots.ipynb
@@ -36,7 +36,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "t = jnp.linspace(0,3, 100)\n",
+    "t = jnp.linspace(0, 3, 100)\n",
     "kernels = [\n",
     "    (CubicKernel, 1),\n",
     "    (QuinticKernel, 1),\n",
@@ -45,7 +45,7 @@
     "    (WendlandC6Kernel, 1.3),\n",
     "    (GaussianKernel, 1),\n",
     "    (SuperGaussianKernel, 1),\n",
-    "    ]\n",
+    "]\n",
     "w = []\n",
     "w_grad = []\n",
     "for k in kernels:\n",
diff --git a/notebooks/misc/dirichlet_energy.py b/notebooks/misc/dirichlet_energy.py
index 8f94c7e..b9bcdc7 100644
--- a/notebooks/misc/dirichlet_energy.py
+++ b/notebooks/misc/dirichlet_energy.py
@@ -1,8 +1,9 @@
 """Dirichelt Energy computation
 
-From: 
+From:
 "Neural SPH: Improved Neural Modeling of Lagrangian Fluid Dynamics", Toshev et al 2024
 """
+
 import os
 
 import jax.numpy as jnp
@@ -128,7 +129,7 @@ def dirichlet_energy(r, tag, mass, dim, dx, box_size, kernel_arg="QSK", is_rho=F
         from jax_sph.solver import rho_summation_fn
 
         rho = rho_summation_fn(mass, i_s, kernel_fn.w(dist), N)
-        print(f"Density deviation from mean: {np.abs(rho-1).mean():.4e}")
+        print(f"Density deviation from mean: {np.abs(rho - 1).mean():.4e}")
 
     return dir_energy, dir_energy_per_particle, rho, drhodr, drhodr_norm
 
@@ -142,8 +143,8 @@ def vis_density(rho, drhodr, drhodr_norm, suffix=""):
     ax[1, 0].scatter(r[:, 0], r[:, 1], c=np.asarray(rho))
     ax[1, 1].scatter(r[:, 0], r[:, 1], c=np.asarray(drhodr_norm))
 
-    ax[0, 0].set_title(f"drhodr_x ({drhodr[:,0].min():.4e}, {drhodr[:,0].max():.4e})")
-    ax[0, 1].set_title(f"drhodr_y ({drhodr[:,1].min():.4e}, {drhodr[:,1].max():.4e})")
+    ax[0, 0].set_title(f"drhodr_x ({drhodr[:, 0].min():.4e}, {drhodr[:, 0].max():.4e})")
+    ax[0, 1].set_title(f"drhodr_y ({drhodr[:, 1].min():.4e}, {drhodr[:, 1].max():.4e})")
     ax[1, 0].set_title(f"rho ({rho.min():.4e}, {rho.max():.4e})")
     ax[1, 1].set_title(
         f"drhodr_norm ({drhodr_norm.min():.4e}, {drhodr_norm.max():.4e})"
diff --git a/notebooks/tutorial.ipynb b/notebooks/tutorial.ipynb
index ab0b8a7..94ae4eb 100644
--- a/notebooks/tutorial.ipynb
+++ b/notebooks/tutorial.ipynb
@@ -53,7 +53,7 @@
     "from jax_sph.jax_md.partition import Sparse\n",
     "from jax_sph.solver import WCSPH\n",
     "from jax_sph.utils import Logger, Tag, pos_init_cartesian_2d\n",
-    "from jax_sph.visualize import plt_ekin\n"
+    "from jax_sph.visualize import plt_ekin"
    ]
   },
   {
@@ -93,6 +93,7 @@
    "source": [
     "### Replacement for a Python case file. Copied from cases/ht.py\n",
     "\n",
+    "\n",
     "class HT(SimulationSetup):\n",
     "    \"Heat Transfer\"\n",
     "\n",
@@ -521,7 +522,7 @@
     "    pbc=np.array(cfg.case.pbc),\n",
     ")\n",
     "num_particles = (state[\"tag\"] != Tag.PAD_VALUE).sum()\n",
-    "neighbors = neighbor_fn.allocate(state[\"r\"], num_particles=num_particles)\n"
+    "neighbors = neighbor_fn.allocate(state[\"r\"], num_particles=num_particles)"
    ]
   },
   {
@@ -773,6 +774,7 @@
     "        plt.show()\n",
     "        plt.close()\n",
     "\n",
+    "\n",
     "paper_plots(data_dir, plt_dir, steps=[0, 1000, 3000])"
    ]
   },
@@ -841,6 +843,7 @@
     "    plt.show()\n",
     "    plt.close()\n",
     "\n",
+    "\n",
     "docs_gif(data_dir, plt_dir)"
    ]
   },
diff --git a/poetry.lock b/poetry.lock
index 0983b67..0e62b87 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,14 +1,15 @@
-# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand.
+# This file is automatically @generated by Poetry 2.2.1 and should not be changed by hand.
 
 [[package]]
 name = "absl-py"
-version = "2.1.0"
+version = "2.3.1"
 description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py."
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
+groups = ["main", "temp"]
 files = [
-    {file = "absl-py-2.1.0.tar.gz", hash = "sha256:7820790efbb316739cde8b4e19357243fc3608a152024288513dd968d7d959ff"},
-    {file = "absl_py-2.1.0-py3-none-any.whl", hash = "sha256:526a04eadab8b4ee719ce68f204172ead1027549089702d99b9059f129ff1308"},
+    {file = "absl_py-2.3.1-py3-none-any.whl", hash = "sha256:eeecf07f0c2a93ace0772c92e596ace6d3d3996c042b2128459aaae2a76de11d"},
+    {file = "absl_py-2.3.1.tar.gz", hash = "sha256:a97820526f7fbfd2ec1bce83f3f25e3a14840dac0d8e02a0b71cd75db3f77fc9"},
 ]
 
 [[package]]
@@ -17,6 +18,7 @@ version = "0.7.16"
 description = "A light, configurable Sphinx theme"
 optional = false
 python-versions = ">=3.9"
+groups = ["docs"]
 files = [
     {file = "alabaster-0.7.16-py3-none-any.whl", hash = "sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92"},
     {file = "alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65"},
@@ -28,6 +30,7 @@ version = "4.9.3"
 description = "ANTLR 4.9.3 runtime for Python 3.7"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "antlr4-python3-runtime-4.9.3.tar.gz", hash = "sha256:f224469b4168294902bb1efa80a8bf7855f24c99aef99cbefc1bcd3cce77881b"},
 ]
@@ -38,6 +41,8 @@ version = "0.1.4"
 description = "Disable App Nap on macOS >= 10.9"
 optional = false
 python-versions = ">=3.6"
+groups = ["temp"]
+markers = "platform_system == \"Darwin\""
 files = [
     {file = "appnope-0.1.4-py2.py3-none-any.whl", hash = "sha256:502575ee11cd7a28c0205f379b525beefebab9d161b7c964670864014ed7213c"},
     {file = "appnope-0.1.4.tar.gz", hash = "sha256:1de3860566df9caf38f01f86f65e0e13e379af54f9e4bee1e66b48f2efffd1ee"},
@@ -45,131 +50,167 @@ files = [
 
 [[package]]
 name = "ase"
-version = "3.23.0"
+version = "3.26.0"
 description = "Atomic Simulation Environment"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
+groups = ["main"]
 files = [
-    {file = "ase-3.23.0-py3-none-any.whl", hash = "sha256:52060410e720b6c701ea1ebecfdeb5ec6f9c1c63edc7cee68c15bd66d226dd43"},
-    {file = "ase-3.23.0.tar.gz", hash = "sha256:91a2aa31d89bd90b0efdfe4a7e84264f32828b2abfc9f38e65e041ad76fec8ae"},
+    {file = "ase-3.26.0-py3-none-any.whl", hash = "sha256:77fd0e609bd3868006d4bb3bb95cdc4081d9e292ac84f6c9fb564b5751d2689e"},
+    {file = "ase-3.26.0.tar.gz", hash = "sha256:a071a355775b0a8062d23e9266e9d811b19d9f6d9ec5215e8032f7d93dc65075"},
 ]
 
 [package.dependencies]
 matplotlib = ">=3.3.4"
-numpy = ">=1.18.5"
+numpy = ">=1.19.5"
 scipy = ">=1.6.0"
 
 [package.extras]
-docs = ["pillow", "sphinx", "sphinx-rtd-theme"]
+docs = ["pillow", "sphinx", "sphinx_book_theme"]
+lint = ["coverage", "flake8", "mypy", "ruff", "types-PyMySQL", "types-docutils"]
 spglib = ["spglib (>=1.9)"]
 test = ["pytest (>=7.0.0)", "pytest-xdist (>=2.1.0)"]
 
 [[package]]
 name = "asttokens"
-version = "2.4.1"
+version = "3.0.0"
 description = "Annotate AST trees with source code positions"
 optional = false
-python-versions = "*"
+python-versions = ">=3.8"
+groups = ["temp"]
 files = [
-    {file = "asttokens-2.4.1-py2.py3-none-any.whl", hash = "sha256:051ed49c3dcae8913ea7cd08e46a606dba30b79993209636c4875bc1d637bc24"},
-    {file = "asttokens-2.4.1.tar.gz", hash = "sha256:b03869718ba9a6eb027e134bfdf69f38a236d681c83c160d510768af11254ba0"},
+    {file = "asttokens-3.0.0-py3-none-any.whl", hash = "sha256:e3078351a059199dd5138cb1c706e6430c05eff2ff136af5eb4790f9d28932e2"},
+    {file = "asttokens-3.0.0.tar.gz", hash = "sha256:0dcd8baa8d62b0c1d118b399b2ddba3c4aff271d0d7a9e0d4c1681c79035bbc7"},
 ]
 
-[package.dependencies]
-six = ">=1.12.0"
-
 [package.extras]
-astroid = ["astroid (>=1,<2)", "astroid (>=2,<4)"]
-test = ["astroid (>=1,<2)", "astroid (>=2,<4)", "pytest"]
+astroid = ["astroid (>=2,<4)"]
+test = ["astroid (>=2,<4)", "pytest", "pytest-cov", "pytest-xdist"]
 
 [[package]]
 name = "babel"
-version = "2.15.0"
+version = "2.17.0"
 description = "Internationalization utilities"
 optional = false
 python-versions = ">=3.8"
+groups = ["docs"]
 files = [
-    {file = "Babel-2.15.0-py3-none-any.whl", hash = "sha256:08706bdad8d0a3413266ab61bd6c34d0c28d6e1e7badf40a2cebe67644e2e1fb"},
-    {file = "babel-2.15.0.tar.gz", hash = "sha256:8daf0e265d05768bc6c7a314cf1321e9a123afc328cc635c18622a2f30a04413"},
+    {file = "babel-2.17.0-py3-none-any.whl", hash = "sha256:4d0b53093fdfb4b21c92b5213dba5a1b23885afa8383709427046b21c366e5f2"},
+    {file = "babel-2.17.0.tar.gz", hash = "sha256:0c54cffb19f690cdcc52a3b50bcbf71e07a808d1c80d549f2459b9d2cf0afb9d"},
 ]
 
 [package.extras]
-dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"]
+dev = ["backports.zoneinfo ; python_version < \"3.9\"", "freezegun (>=1.0,<2.0)", "jinja2 (>=3.0)", "pytest (>=6.0)", "pytest-cov", "pytz", "setuptools", "tzdata ; sys_platform == \"win32\""]
 
 [[package]]
 name = "certifi"
-version = "2024.6.2"
+version = "2025.10.5"
 description = "Python package for providing Mozilla's CA Bundle."
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
+groups = ["main", "docs"]
 files = [
-    {file = "certifi-2024.6.2-py3-none-any.whl", hash = "sha256:ddc6c8ce995e6987e7faf5e3f1b02b302836a0e5d98ece18392cb1a36c72ad56"},
-    {file = "certifi-2024.6.2.tar.gz", hash = "sha256:3cd43f1c6fa7dedc5899d69d3ad0398fd018ad1a17fba83ddaf78aa46c747516"},
+    {file = "certifi-2025.10.5-py3-none-any.whl", hash = "sha256:0f212c2744a9bb6de0c56639a6f68afe01ecd92d91f14ae897c4fe7bbeeef0de"},
+    {file = "certifi-2025.10.5.tar.gz", hash = "sha256:47c09d31ccf2acf0be3f701ea53595ee7e0b8fa08801c6624be771df09ae7b43"},
 ]
 
 [[package]]
 name = "cffi"
-version = "1.16.0"
+version = "2.0.0"
 description = "Foreign Function Interface for Python calling C code."
 optional = false
-python-versions = ">=3.8"
-files = [
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 [package.dependencies]
-pycparser = "*"
+pycparser = {version = "*", markers = "implementation_name != \"PyPy\""}
 
 [[package]]
 name = "cfgv"
@@ -177,6 +218,7 @@ version = "3.4.0"
 description = "Validate configuration and produce human readable error messages."
 optional = false
 python-versions = ">=3.8"
+groups = ["dev"]
 files = [
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@@ -184,109 +226,147 @@ files = [
 
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 version = "0.4.6"
 description = "Cross-platform colored terminal text."
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
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 ]
 
 [package.dependencies]
 tomli = {version = "*", optional = true, markers = "python_full_version <= \"3.11.0a6\" and extra == \"toml\""}
 
 [package.extras]
-toml = ["tomli"]
+toml = ["tomli ; python_full_version <= \"3.11.0a6\""]
 
 [[package]]
 name = "cycler"
@@ -445,6 +684,7 @@ version = "0.12.1"
 description = "Composable style cycles"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "cycler-0.12.1-py3-none-any.whl", hash = "sha256:85cef7cff222d8644161529808465972e51340599459b8ac3ccbac5a854e0d30"},
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@@ -456,55 +696,66 @@ tests = ["pytest", "pytest-cov", "pytest-xdist"]
 
 [[package]]
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-version = "1.8.1"
+version = "1.8.17"
 description = "An implementation of the Debug Adapter Protocol for Python"
 optional = false
 python-versions = ">=3.8"
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 ]
 
 [[package]]
 name = "decorator"
-version = "5.1.1"
+version = "5.2.1"
 description = "Decorators for Humans"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.8"
+groups = ["temp"]
 files = [
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 ]
 
 [[package]]
 name = "distlib"
-version = "0.3.8"
+version = "0.4.0"
 description = "Distribution utilities"
 optional = false
 python-versions = "*"
+groups = ["dev"]
 files = [
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 ]
 
 [[package]]
@@ -513,6 +764,7 @@ version = "0.18.1"
 description = "Docutils -- Python Documentation Utilities"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+groups = ["docs"]
 files = [
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@@ -520,171 +772,240 @@ files = [
 
 [[package]]
 name = "equinox"
-version = "0.11.4"
+version = "0.13.0"
 description = "Elegant easy-to-use neural networks in JAX."
 optional = false
-python-versions = "~=3.9"
+python-versions = ">=3.10"
+groups = ["temp"]
+markers = "python_version >= \"3.11\" and python_version < \"3.13\""
 files = [
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 ]
 
 [package.dependencies]
-jax = ">=0.4.13"
+jax = ">=0.4.38"
 jaxtyping = ">=0.2.20"
 typing-extensions = ">=4.5.0"
+wadler-lindig = ">=0.1.0"
+
+[package.extras]
+docs = ["griffe (==1.7.3)", "hippogriffe (==0.2.0)", "mkdocs (==1.6.1)", "mkdocs-include-exclude-files (==0.1.0)", "mkdocs-ipynb (==0.1.0)", "mkdocs-material (==9.6.7)", "mkdocstrings[python] (==0.28.3)", "pymdown-extensions (==10.14.3)"]
+
+[[package]]
+name = "equinox"
+version = "0.13.2"
+description = "Elegant easy-to-use neural networks in JAX."
+optional = false
+python-versions = ">=3.10"
+groups = ["temp"]
+markers = "python_version == \"3.10\" or python_version >= \"3.13\""
+files = [
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+[package.dependencies]
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+jaxtyping = ">=0.2.20"
+typing-extensions = ">=4.5.0"
+wadler-lindig = ">=0.1.0"
+
+[package.extras]
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+docs = ["griffe (==1.7.3)", "hippogriffe (==0.2.2)", "mkdocs (==1.6.1)", "mkdocs-include-exclude-files (==0.1.0)", "mkdocs-ipynb (==0.1.1)", "mkdocs-material (==9.6.7)", "mkdocstrings (==0.28.3)", "mkdocstrings-python (==1.16.8)", "pymdown-extensions (==10.14.3)"]
+tests = ["beartype", "jaxlib", "optax", "pytest"]
 
 [[package]]
 name = "exceptiongroup"
-version = "1.2.1"
+version = "1.3.0"
 description = "Backport of PEP 654 (exception groups)"
 optional = false
 python-versions = ">=3.7"
+groups = ["dev", "temp"]
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 ]
 
+[package.dependencies]
+typing-extensions = {version = ">=4.6.0", markers = "python_version < \"3.13\""}
+
 [package.extras]
 test = ["pytest (>=6)"]
 
 [[package]]
 name = "executing"
-version = "2.0.1"
+version = "2.2.1"
 description = "Get the currently executing AST node of a frame, and other information"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.8"
+groups = ["temp"]
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 ]
 
 [package.extras]
-tests = ["asttokens (>=2.1.0)", "coverage", "coverage-enable-subprocess", "ipython", "littleutils", "pytest", "rich"]
+tests = ["asttokens (>=2.1.0)", "coverage", "coverage-enable-subprocess", "ipython", "littleutils", "pytest", "rich ; python_version >= \"3.11\""]
 
 [[package]]
 name = "filelock"
-version = "3.14.0"
+version = "3.20.0"
 description = "A platform independent file lock."
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.10"
+groups = ["dev"]
 files = [
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-[[package]]
-name = "importlib-metadata"
-version = "7.1.0"
-description = "Read metadata from Python packages"
-optional = false
-python-versions = ">=3.8"
-files = [
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-]
-
-[package.dependencies]
-zipp = ">=0.5"
-
-[package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-perf = ["ipython"]
-testing = ["flufl.flake8", "importlib-resources (>=1.3)", "jaraco.test (>=5.4)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy", "pytest-perf (>=0.9.2)", "pytest-ruff (>=0.2.1)"]
-
-[[package]]
-name = "importlib-resources"
-version = "6.4.0"
-description = "Read resources from Python packages"
-optional = false
-python-versions = ">=3.8"
-files = [
-    {file = "importlib_resources-6.4.0-py3-none-any.whl", hash = "sha256:50d10f043df931902d4194ea07ec57960f66a80449ff867bfe782b4c486ba78c"},
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-]
-
-[package.dependencies]
-zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""}
-
-[package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["jaraco.test (>=5.4)", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy", "pytest-ruff (>=0.2.1)", "zipp (>=3.17)"]
-
 [[package]]
 name = "iniconfig"
-version = "2.0.0"
+version = "2.1.0"
 description = "brain-dead simple config-ini parsing"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
+groups = ["dev"]
 files = [
-    {file = "iniconfig-2.0.0-py3-none-any.whl", hash = "sha256:b6a85871a79d2e3b22d2d1b94ac2824226a63c6b741c88f7ae975f18b6778374"},
-    {file = "iniconfig-2.0.0.tar.gz", hash = "sha256:2d91e135bf72d31a410b17c16da610a82cb55f6b0477d1a902134b24a455b8b3"},
+    {file = "iniconfig-2.1.0-py3-none-any.whl", hash = "sha256:9deba5723312380e77435581c6bf4935c94cbfab9b1ed33ef8d238ea168eb760"},
+    {file = "iniconfig-2.1.0.tar.gz", hash = "sha256:3abbd2e30b36733fee78f9c7f7308f2d0050e88f0087fd25c2645f63c773e1c7"},
 ]
 
 [[package]]
 name = "ipykernel"
-version = "6.29.4"
+version = "7.0.0"
 description = "IPython Kernel for Jupyter"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.10"
+groups = ["temp"]
 files = [
-    {file = "ipykernel-6.29.4-py3-none-any.whl", hash = "sha256:1181e653d95c6808039c509ef8e67c4126b3b3af7781496c7cbfb5ed938a27da"},
-    {file = "ipykernel-6.29.4.tar.gz", hash = "sha256:3d44070060f9475ac2092b760123fadf105d2e2493c24848b6691a7c4f42af5c"},
+    {file = "ipykernel-7.0.0-py3-none-any.whl", hash = "sha256:28793cecaa6a669e3be80eb6d24803202388b6a955929b0a4e13404d8c92062b"},
+    {file = "ipykernel-7.0.0.tar.gz", hash = "sha256:06aef83f27adbce00b23345aa70f749f907dc4ac6f4a41fe7bf5f780dc506225"},
 ]
 
 [package.dependencies]
-appnope = {version = "*", markers = "platform_system == \"Darwin\""}
+appnope = {version = ">=0.1.2", markers = "platform_system == \"Darwin\""}
 comm = ">=0.1.1"
 debugpy = ">=1.6.5"
 ipython = ">=7.23.1"
-jupyter-client = ">=6.1.12"
+jupyter-client = ">=8.0.0"
 jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
 matplotlib-inline = ">=0.1"
-nest-asyncio = "*"
-packaging = "*"
-psutil = "*"
-pyzmq = ">=24"
-tornado = ">=6.1"
+nest-asyncio = ">=1.4"
+packaging = ">=22"
+psutil = ">=5.7"
+pyzmq = ">=25"
+tornado = ">=6.2"
 traitlets = ">=5.4.0"
 
 [package.extras]
-cov = ["coverage[toml]", "curio", "matplotlib", "pytest-cov", "trio"]
-docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-spelling", "trio"]
+cov = ["coverage[toml]", "matplotlib", "pytest-cov", "trio"]
+docs = ["intersphinx-registry", "myst-parser", "pydata-sphinx-theme", "sphinx (<8.2.0)", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-spelling", "trio"]
 pyqt5 = ["pyqt5"]
 pyside6 = ["pyside6"]
-test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio (>=0.23.5)", "pytest-cov", "pytest-timeout"]
+test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0,<9)", "pytest-asyncio (>=0.23.5)", "pytest-cov", "pytest-timeout"]
 
 [[package]]
 name = "ipython"
-version = "8.18.1"
+version = "8.37.0"
 description = "IPython: Productive Interactive Computing"
 optional = false
-python-versions = ">=3.9"
+python-versions = ">=3.10"
+groups = ["temp"]
+markers = "python_version == \"3.10\""
 files = [
-    {file = "ipython-8.18.1-py3-none-any.whl", hash = "sha256:e8267419d72d81955ec1177f8a29aaa90ac80ad647499201119e2f05e99aa397"},
-    {file = "ipython-8.18.1.tar.gz", hash = "sha256:ca6f079bb33457c66e233e4580ebfc4128855b4cf6370dddd73842a9563e8a27"},
+    {file = "ipython-8.37.0-py3-none-any.whl", hash = "sha256:ed87326596b878932dbcb171e3e698845434d8c61b8d8cd474bf663041a9dcf2"},
+    {file = "ipython-8.37.0.tar.gz", hash = "sha256:ca815841e1a41a1e6b73a0b08f3038af9b2252564d01fc405356d34033012216"},
 ]
 
 [package.dependencies]
@@ -810,105 +1103,294 @@ decorator = "*"
 exceptiongroup = {version = "*", markers = "python_version < \"3.11\""}
 jedi = ">=0.16"
 matplotlib-inline = "*"
-pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""}
-prompt-toolkit = ">=3.0.41,<3.1.0"
+pexpect = {version = ">4.3", markers = "sys_platform != \"win32\" and sys_platform != \"emscripten\""}
+prompt_toolkit = ">=3.0.41,<3.1.0"
 pygments = ">=2.4.0"
-stack-data = "*"
-traitlets = ">=5"
-typing-extensions = {version = "*", markers = "python_version < \"3.10\""}
+stack_data = "*"
+traitlets = ">=5.13.0"
+typing_extensions = {version = ">=4.6", markers = "python_version < \"3.12\""}
 
 [package.extras]
-all = ["black", "curio", "docrepr", "exceptiongroup", "ipykernel", "ipyparallel", "ipywidgets", "matplotlib", "matplotlib (!=3.2.0)", "nbconvert", "nbformat", "notebook", "numpy (>=1.22)", "pandas", "pickleshare", "pytest (<7)", "pytest (<7.1)", "pytest-asyncio (<0.22)", "qtconsole", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "stack-data", "testpath", "trio", "typing-extensions"]
+all = ["ipython[black,doc,kernel,matplotlib,nbconvert,nbformat,notebook,parallel,qtconsole]", "ipython[test,test-extra]"]
 black = ["black"]
-doc = ["docrepr", "exceptiongroup", "ipykernel", "matplotlib", "pickleshare", "pytest (<7)", "pytest (<7.1)", "pytest-asyncio (<0.22)", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "stack-data", "testpath", "typing-extensions"]
+doc = ["docrepr", "exceptiongroup", "intersphinx_registry", "ipykernel", "ipython[test]", "matplotlib", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "sphinxcontrib-jquery", "tomli ; python_version < \"3.11\"", "typing_extensions"]
 kernel = ["ipykernel"]
+matplotlib = ["matplotlib"]
 nbconvert = ["nbconvert"]
 nbformat = ["nbformat"]
 notebook = ["ipywidgets", "notebook"]
 parallel = ["ipyparallel"]
 qtconsole = ["qtconsole"]
-test = ["pickleshare", "pytest (<7.1)", "pytest-asyncio (<0.22)", "testpath"]
-test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.22)", "pandas", "pickleshare", "pytest (<7.1)", "pytest-asyncio (<0.22)", "testpath", "trio"]
+test = ["packaging", "pickleshare", "pytest", "pytest-asyncio (<0.22)", "testpath"]
+test-extra = ["curio", "ipython[test]", "jupyter_ai", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.23)", "pandas", "trio"]
+
+[[package]]
+name = "ipython"
+version = "9.6.0"
+description = "IPython: Productive Interactive Computing"
+optional = false
+python-versions = ">=3.11"
+groups = ["temp"]
+markers = "python_version >= \"3.11\""
+files = [
+    {file = "ipython-9.6.0-py3-none-any.whl", hash = "sha256:5f77efafc886d2f023442479b8149e7d86547ad0a979e9da9f045d252f648196"},
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+]
+
+[package.dependencies]
+colorama = {version = "*", markers = "sys_platform == \"win32\""}
+decorator = "*"
+ipython-pygments-lexers = "*"
+jedi = ">=0.16"
+matplotlib-inline = "*"
+pexpect = {version = ">4.3", markers = "sys_platform != \"win32\" and sys_platform != \"emscripten\""}
+prompt_toolkit = ">=3.0.41,<3.1.0"
+pygments = ">=2.4.0"
+stack_data = "*"
+traitlets = ">=5.13.0"
+typing_extensions = {version = ">=4.6", markers = "python_version < \"3.12\""}
+
+[package.extras]
+all = ["ipython[doc,matplotlib,test,test-extra]"]
+black = ["black"]
+doc = ["docrepr", "exceptiongroup", "intersphinx_registry", "ipykernel", "ipython[matplotlib,test]", "setuptools (>=61.2)", "sphinx (>=1.3)", "sphinx-rtd-theme", "sphinx_toml (==0.0.4)", "typing_extensions"]
+matplotlib = ["matplotlib (>3.7)"]
+test = ["packaging", "pytest", "pytest-asyncio", "testpath"]
+test-extra = ["curio", "ipykernel", "ipython[matplotlib]", "ipython[test]", "jupyter_ai", "nbclient", "nbformat", "numpy (>=1.25)", "pandas (>2.0)", "trio"]
+
+[[package]]
+name = "ipython-pygments-lexers"
+version = "1.1.1"
+description = "Defines a variety of Pygments lexers for highlighting IPython code."
+optional = false
+python-versions = ">=3.8"
+groups = ["temp"]
+markers = "python_version >= \"3.11\""
+files = [
+    {file = "ipython_pygments_lexers-1.1.1-py3-none-any.whl", hash = "sha256:a9462224a505ade19a605f71f8fa63c2048833ce50abc86768a0d81d876dc81c"},
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+]
+
+[package.dependencies]
+pygments = "*"
 
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 name = "jax"
-version = "0.4.29"
+version = "0.6.2"
 description = "Differentiate, compile, and transform Numpy code."
 optional = false
-python-versions = ">=3.9"
+python-versions = ">=3.10"
+groups = ["main", "temp"]
+markers = "python_version == \"3.10\""
 files = [
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+    {file = "jax-0.6.2.tar.gz", hash = "sha256:a437d29038cbc8300334119692744704ca7941490867b9665406b7f90665cd96"},
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 [package.dependencies]
-importlib-metadata = {version = ">=4.6", markers = "python_version < \"3.10\""}
-jaxlib = {version = "0.4.29", optional = true, markers = "extra == \"cpu\""}
-ml-dtypes = ">=0.4.0"
-numpy = [
-    {version = ">=1.23.2", markers = "python_version >= \"3.11\""},
-    {version = ">=1.22", markers = "python_version < \"3.11\""},
+jaxlib = "0.6.2"
+ml_dtypes = ">=0.5.0"
+numpy = ">=1.26"
+opt_einsum = "*"
+scipy = ">=1.12"
+
+[package.extras]
+ci = ["jaxlib (==0.6.1)"]
+cuda = ["jax-cuda12-plugin[with-cuda] (==0.6.2)", "jaxlib (==0.6.2)"]
+cuda12 = ["jax-cuda12-plugin[with-cuda] (==0.6.2)", "jaxlib (==0.6.2)"]
+cuda12-local = ["jax-cuda12-plugin (==0.6.2)", "jaxlib (==0.6.2)"]
+k8s = ["kubernetes"]
+minimum-jaxlib = ["jaxlib (==0.6.2)"]
+rocm = ["jax-rocm60-plugin (==0.6.2)", "jaxlib (==0.6.2)"]
+tpu = ["jaxlib (==0.6.2)", "libtpu (==0.0.17.*)", "requests"]
+xprof = ["xprof"]
+
+[[package]]
+name = "jax"
+version = "0.7.1"
+description = "Differentiate, compile, and transform Numpy code."
+optional = false
+python-versions = ">=3.11"
+groups = ["main", "temp"]
+markers = "python_version >= \"3.11\" and python_version < \"3.13\""
+files = [
+    {file = "jax-0.7.1-py3-none-any.whl", hash = "sha256:056e576e0e58465506125699f48111ac8891cce4c9ebf034704c42b219dfd4a6"},
+    {file = "jax-0.7.1.tar.gz", hash = "sha256:118f56338c503361d2791f069d24339d8d44a8db442ed851d2e591222fb7a56d"},
 ]
-opt-einsum = "*"
-scipy = ">=1.9"
+
+[package.dependencies]
+jaxlib = "0.7.1"
+ml_dtypes = ">=0.5.0"
+numpy = ">=1.26"
+opt_einsum = "*"
+scipy = ">=1.12"
 
 [package.extras]
-ci = ["jaxlib (==0.4.28)"]
-cpu = ["jaxlib (==0.4.29)"]
-cuda = ["jaxlib (==0.4.29+cuda12.cudnn91)"]
-cuda12 = ["jax-cuda12-plugin (==0.4.29)", "jaxlib (==0.4.29)", "nvidia-cublas-cu12 (>=12.1.3.1)", "nvidia-cuda-cupti-cu12 (>=12.1.105)", "nvidia-cuda-nvcc-cu12 (>=12.1.105)", "nvidia-cuda-runtime-cu12 (>=12.1.105)", "nvidia-cudnn-cu12 (>=9.0,<10.0)", "nvidia-cufft-cu12 (>=11.0.2.54)", "nvidia-cusolver-cu12 (>=11.4.5.107)", "nvidia-cusparse-cu12 (>=12.1.0.106)", "nvidia-nccl-cu12 (>=2.18.1)", "nvidia-nvjitlink-cu12 (>=12.1.105)"]
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-cuda12-local = ["jaxlib (==0.4.29+cuda12.cudnn91)"]
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-minimum-jaxlib = ["jaxlib (==0.4.27)"]
-tpu = ["jaxlib (==0.4.29)", "libtpu-nightly (==0.1.dev20240609)", "requests"]
+ci = ["jaxlib (==0.7.0)"]
+cuda = ["jax-cuda12-plugin[with-cuda] (==0.7.1)", "jaxlib (==0.7.1)"]
+cuda12 = ["jax-cuda12-plugin[with-cuda] (==0.7.1)", "jaxlib (==0.7.1)"]
+cuda12-local = ["jax-cuda12-plugin (==0.7.1)", "jaxlib (==0.7.1)"]
+cuda13 = ["jax-cuda13-plugin[with-cuda] (==0.7.1)", "jaxlib (==0.7.1)"]
+cuda13-local = ["jax-cuda13-plugin (==0.7.1)", "jaxlib (==0.7.1)"]
+k8s = ["kubernetes"]
+minimum-jaxlib = ["jaxlib (==0.7.1)"]
+rocm = ["jax-rocm60-plugin (==0.7.1)", "jaxlib (==0.7.1)"]
+tpu = ["jaxlib (==0.7.1)", "libtpu (==0.0.20.*)", "requests"]
+xprof = ["xprof"]
 
 [[package]]
-name = "jaxlib"
-version = "0.4.29"
-description = "XLA library for JAX"
+name = "jax"
+version = "0.7.2"
+description = "Differentiate, compile, and transform Numpy code."
 optional = false
-python-versions = ">=3.9"
+python-versions = ">=3.11"
+groups = ["main", "temp"]
+markers = "python_version >= \"3.13\""
 files = [
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 description = "An autocompletion tool for Python that can be used for text editors."
 optional = false
 python-versions = ">=3.6"
+groups = ["temp"]
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-testing = ["Django", "attrs", "colorama", "docopt", "pytest (<7.0.0)"]
+testing = ["Django", "attrs", "colorama", "docopt", "pytest (<9.0.0)"]
 
 [[package]]
 name = "jinja2"
-version = "3.1.4"
+version = "3.1.6"
 description = "A very fast and expressive template engine."
 optional = false
 python-versions = ">=3.7"
+groups = ["docs"]
 files = [
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 [package.dependencies]
@@ -973,6 +1463,7 @@ version = "0.0.6.dev0"
 description = "Jraph: A library for Graph Neural Networks in Jax"
 optional = false
 python-versions = ">=3.6"
+groups = ["main"]
 files = [
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@@ -989,17 +1480,17 @@ ogb-examples = ["absl-py (>=0.9)", "dm-haiku (>=0.0.2)", "dm-tree (>=0.1.5)", "o
 
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 [[package]]
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+version = "5.8.1"
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 python-versions = ">=3.8"
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 [package.dependencies]
@@ -1027,271 +1519,318 @@ pywin32 = {version = ">=300", markers = "sys_platform == \"win32\" and platform_
 traitlets = ">=5.3"
 
 [package.extras]
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+test = ["ipykernel", "pre-commit", "pytest (<9)", "pytest-cov", "pytest-timeout"]
 
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 [package.dependencies]
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 kiwisolver = ">=1.3.1"
 numpy = ">=1.23"
 packaging = ">=20.0"
 pillow = ">=8"
-pyparsing = ">=2.3.1"
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 python-dateutil = ">=2.7"
 
 [package.extras]
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 [[package]]
 name = "matplotlib-inline"
@@ -1299,6 +1838,7 @@ version = "0.1.7"
 description = "Inline Matplotlib backend for Jupyter"
 optional = false
 python-versions = ">=3.8"
+groups = ["temp"]
 files = [
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@@ -1309,75 +1849,153 @@ traitlets = "*"
 
 [[package]]
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 description = "Generic Python Materials Science tools"
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 ]
 
 [package.dependencies]
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+ase = ">=3.23.0"
 numpy = ">=1.16.0"
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 scipy = ">=1.2.3"
 
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 test = ["atomman", "ovito", "pytest", "pytest-subtests", "sympy"]
 
+[[package]]
+name = "matscipy"
+version = "1.1.1"
+description = "Generic Python Materials Science tools"
+optional = false
+python-versions = ">=3.8.0"
+groups = ["main"]
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 ]
 
 [package.dependencies]
 numpy = [
+    {version = ">=1.21.2", markers = "python_version >= \"3.10\""},
     {version = ">=1.23.3", markers = "python_version >= \"3.11\""},
-    {version = ">=1.21.2", markers = "python_version >= \"3.10\" and python_version < \"3.11\""},
-    {version = ">1.20", markers = "python_version < \"3.10\""},
+    {version = ">=2.1.0", markers = "python_version >= \"3.13\""},
+    {version = ">=1.26.0", markers = "python_version == \"3.12\""},
 ]
 
 [package.extras]
@@ -1389,6 +2007,7 @@ version = "1.6.0"
 description = "Patch asyncio to allow nested event loops"
 optional = false
 python-versions = ">=3.5"
+groups = ["temp"]
 files = [
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@@ -1400,6 +2019,7 @@ version = "1.9.1"
 description = "Node.js virtual environment builder"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
+groups = ["dev"]
 files = [
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@@ -1411,6 +2031,8 @@ version = "1.26.4"
 description = "Fundamental package for array computing in Python"
 optional = false
 python-versions = ">=3.9"
+groups = ["main", "temp"]
+markers = "python_version <= \"3.12\""
 files = [
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@@ -1450,12 +2072,98 @@ files = [
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 ]
 
+[[package]]
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+description = "Fundamental package for array computing in Python"
+optional = false
+python-versions = ">=3.11"
+groups = ["main", "temp"]
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 version = "2.3.0"
 description = "A flexible configuration library"
 optional = false
 python-versions = ">=3.6"
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@@ -1467,98 +2175,146 @@ PyYAML = ">=5.1.0"
 
 [[package]]
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+version = "3.4.0"
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+python-versions = ">=3.8"
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+
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+jaxlib = ">=0.5.3"
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-tests = ["pytest", "pytest-cov", "pytest-pep8"]
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+lineax = ">=0.0.7"
 numpy = ">=1.20.0"
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 python-versions = "*"
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+    {file = "pillow-11.3.0-pp311-pypy311_pp73-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:504b6f59505f08ae014f724b6207ff6222662aab5cc9542577fb084ed0676ac7"},
+    {file = "pillow-11.3.0-pp311-pypy311_pp73-win_amd64.whl", hash = "sha256:c84d689db21a1c397d001aa08241044aa2069e7587b398c8cc63020390b1c1b8"},
+    {file = "pillow-11.3.0.tar.gz", hash = "sha256:3828ee7586cd0b2091b6209e5ad53e20d0649bbe87164a459d0676e035e8f523"},
+]
+
+[package.extras]
+docs = ["furo", "olefile", "sphinx (>=8.2)", "sphinx-autobuild", "sphinx-copybutton", "sphinx-inline-tabs", "sphinxext-opengraph"]
 fpx = ["olefile"]
 mic = ["olefile"]
-tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "packaging", "pyroma", "pytest", "pytest-cov", "pytest-timeout"]
-typing = ["typing-extensions"]
+test-arrow = ["pyarrow"]
+tests = ["check-manifest", "coverage (>=7.4.2)", "defusedxml", "markdown2", "olefile", "packaging", "pyroma", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "trove-classifiers (>=2024.10.12)"]
+typing = ["typing-extensions ; python_version < \"3.10\""]
 xmp = ["defusedxml"]
 
 [[package]]
 name = "platformdirs"
-version = "4.2.2"
+version = "4.5.0"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.10"
+groups = ["main", "dev", "temp"]
 files = [
-    {file = "platformdirs-4.2.2-py3-none-any.whl", hash = "sha256:2d7a1657e36a80ea911db832a8a6ece5ee53d8de21edd5cc5879af6530b1bfee"},
-    {file = "platformdirs-4.2.2.tar.gz", hash = "sha256:38b7b51f512eed9e84a22788b4bce1de17c0adb134d6becb09836e37d8654cd3"},
+    {file = "platformdirs-4.5.0-py3-none-any.whl", hash = "sha256:e578a81bb873cbb89a41fcc904c7ef523cc18284b7e3b3ccf06aca1403b7ebd3"},
+    {file = "platformdirs-4.5.0.tar.gz", hash = "sha256:70ddccdd7c99fc5942e9fc25636a8b34d04c24b335100223152c2803e4063312"},
 ]
 
 [package.extras]
-docs = ["furo (>=2023.9.10)", "proselint (>=0.13)", "sphinx (>=7.2.6)", "sphinx-autodoc-typehints (>=1.25.2)"]
-test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=7.4.3)", "pytest-cov (>=4.1)", "pytest-mock (>=3.12)"]
-type = ["mypy (>=1.8)"]
+docs = ["furo (>=2025.9.25)", "proselint (>=0.14)", "sphinx (>=8.2.3)", "sphinx-autodoc-typehints (>=3.2)"]
+test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=8.4.2)", "pytest-cov (>=7)", "pytest-mock (>=3.15.1)"]
+type = ["mypy (>=1.18.2)"]
 
 [[package]]
 name = "pluggy"
-version = "1.5.0"
+version = "1.6.0"
 description = "plugin and hook calling mechanisms for python"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
+groups = ["dev"]
 files = [
-    {file = "pluggy-1.5.0-py3-none-any.whl", hash = "sha256:44e1ad92c8ca002de6377e165f3e0f1be63266ab4d554740532335b9d75ea669"},
-    {file = "pluggy-1.5.0.tar.gz", hash = "sha256:2cffa88e94fdc978c4c574f15f9e59b7f4201d439195c3715ca9e2486f1d0cf1"},
+    {file = "pluggy-1.6.0-py3-none-any.whl", hash = "sha256:e920276dd6813095e9377c0bc5566d94c932c33b27a3e3945d8389c374dd4746"},
+    {file = "pluggy-1.6.0.tar.gz", hash = "sha256:7dcc130b76258d33b90f61b658791dede3486c3e6bfb003ee5c9bfb396dd22f3"},
 ]
 
 [package.extras]
 dev = ["pre-commit", "tox"]
-testing = ["pytest", "pytest-benchmark"]
+testing = ["coverage", "pytest", "pytest-benchmark"]
 
 [[package]]
 name = "pooch"
@@ -1741,6 +2541,7 @@ version = "1.8.2"
 description = "A friend to fetch your data files"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "pooch-1.8.2-py3-none-any.whl", hash = "sha256:3529a57096f7198778a5ceefd5ac3ef0e4d06a6ddaf9fc2d609b806f25302c47"},
     {file = "pooch-1.8.2.tar.gz", hash = "sha256:76561f0de68a01da4df6af38e9955c4c9d1a5c90da73f7e40276a5728ec83d10"},
@@ -1758,13 +2559,14 @@ xxhash = ["xxhash (>=1.4.3)"]
 
 [[package]]
 name = "pre-commit"
-version = "3.7.1"
+version = "4.3.0"
 description = "A framework for managing and maintaining multi-language pre-commit hooks."
 optional = false
 python-versions = ">=3.9"
+groups = ["dev"]
 files = [
-    {file = "pre_commit-3.7.1-py2.py3-none-any.whl", hash = "sha256:fae36fd1d7ad7d6a5a1c0b0d5adb2ed1a3bda5a21bf6c3e5372073d7a11cd4c5"},
-    {file = "pre_commit-3.7.1.tar.gz", hash = "sha256:8ca3ad567bc78a4972a3f1a477e94a79d4597e8140a6e0b651c5e33899c3654a"},
+    {file = "pre_commit-4.3.0-py2.py3-none-any.whl", hash = "sha256:2b0747ad7e6e967169136edffee14c16e148a778a54e4f967921aa1ebf2308d8"},
+    {file = "pre_commit-4.3.0.tar.gz", hash = "sha256:499fe450cc9d42e9d58e606262795ecb64dd05438943c62b66f6a8673da30b16"},
 ]
 
 [package.dependencies]
@@ -1776,13 +2578,14 @@ virtualenv = ">=20.10.0"
 
 [[package]]
 name = "prompt-toolkit"
-version = "3.0.47"
+version = "3.0.52"
 description = "Library for building powerful interactive command lines in Python"
 optional = false
-python-versions = ">=3.7.0"
+python-versions = ">=3.8"
+groups = ["temp"]
 files = [
-    {file = "prompt_toolkit-3.0.47-py3-none-any.whl", hash = "sha256:0d7bfa67001d5e39d02c224b663abc33687405033a8c422d0d675a5a13361d10"},
-    {file = "prompt_toolkit-3.0.47.tar.gz", hash = "sha256:1e1b29cb58080b1e69f207c893a1a7bf16d127a5c30c9d17a25a5d77792e5360"},
+    {file = "prompt_toolkit-3.0.52-py3-none-any.whl", hash = "sha256:9aac639a3bbd33284347de5ad8d68ecc044b91a762dc39b7c21095fcd6a19955"},
+    {file = "prompt_toolkit-3.0.52.tar.gz", hash = "sha256:28cde192929c8e7321de85de1ddbe736f1375148b02f2e17edd840042b1be855"},
 ]
 
 [package.dependencies]
@@ -1790,31 +2593,26 @@ wcwidth = "*"
 
 [[package]]
 name = "psutil"
-version = "5.9.8"
-description = "Cross-platform lib for process and system monitoring in Python."
+version = "7.1.0"
+description = "Cross-platform lib for process and system monitoring."
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
+python-versions = ">=3.6"
+groups = ["temp"]
 files = [
-    {file = "psutil-5.9.8-cp27-cp27m-macosx_10_9_x86_64.whl", hash = "sha256:26bd09967ae00920df88e0352a91cff1a78f8d69b3ecabbfe733610c0af486c8"},
-    {file = "psutil-5.9.8-cp27-cp27m-manylinux2010_i686.whl", hash = "sha256:05806de88103b25903dff19bb6692bd2e714ccf9e668d050d144012055cbca73"},
-    {file = "psutil-5.9.8-cp27-cp27m-manylinux2010_x86_64.whl", hash = "sha256:611052c4bc70432ec770d5d54f64206aa7203a101ec273a0cd82418c86503bb7"},
-    {file = "psutil-5.9.8-cp27-cp27mu-manylinux2010_i686.whl", hash = "sha256:50187900d73c1381ba1454cf40308c2bf6f34268518b3f36a9b663ca87e65e36"},
-    {file = "psutil-5.9.8-cp27-cp27mu-manylinux2010_x86_64.whl", hash = "sha256:02615ed8c5ea222323408ceba16c60e99c3f91639b07da6373fb7e6539abc56d"},
-    {file = "psutil-5.9.8-cp27-none-win32.whl", hash = "sha256:36f435891adb138ed3c9e58c6af3e2e6ca9ac2f365efe1f9cfef2794e6c93b4e"},
-    {file = "psutil-5.9.8-cp27-none-win_amd64.whl", hash = "sha256:bd1184ceb3f87651a67b2708d4c3338e9b10c5df903f2e3776b62303b26cb631"},
-    {file = "psutil-5.9.8-cp36-abi3-macosx_10_9_x86_64.whl", hash = "sha256:aee678c8720623dc456fa20659af736241f575d79429a0e5e9cf88ae0605cc81"},
-    {file = "psutil-5.9.8-cp36-abi3-manylinux_2_12_i686.manylinux2010_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:8cb6403ce6d8e047495a701dc7c5bd788add903f8986d523e3e20b98b733e421"},
-    {file = "psutil-5.9.8-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:d06016f7f8625a1825ba3732081d77c94589dca78b7a3fc072194851e88461a4"},
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-    {file = "psutil-5.9.8-cp36-cp36m-win_amd64.whl", hash = "sha256:27cc40c3493bb10de1be4b3f07cae4c010ce715290a5be22b98493509c6299e2"},
-    {file = "psutil-5.9.8-cp37-abi3-win32.whl", hash = "sha256:bc56c2a1b0d15aa3eaa5a60c9f3f8e3e565303b465dbf57a1b730e7a2b9844e0"},
-    {file = "psutil-5.9.8-cp37-abi3-win_amd64.whl", hash = "sha256:8db4c1b57507eef143a15a6884ca10f7c73876cdf5d51e713151c1236a0e68cf"},
-    {file = "psutil-5.9.8-cp38-abi3-macosx_11_0_arm64.whl", hash = "sha256:d16bbddf0693323b8c6123dd804100241da461e41d6e332fb0ba6058f630f8c8"},
-    {file = "psutil-5.9.8.tar.gz", hash = "sha256:6be126e3225486dff286a8fb9a06246a5253f4c7c53b475ea5f5ac934e64194c"},
+    {file = "psutil-7.1.0-cp36-abi3-macosx_10_9_x86_64.whl", hash = "sha256:76168cef4397494250e9f4e73eb3752b146de1dd950040b29186d0cce1d5ca13"},
+    {file = "psutil-7.1.0-cp36-abi3-macosx_11_0_arm64.whl", hash = "sha256:5d007560c8c372efdff9e4579c2846d71de737e4605f611437255e81efcca2c5"},
+    {file = "psutil-7.1.0-cp36-abi3-manylinux_2_12_i686.manylinux2010_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:22e4454970b32472ce7deaa45d045b34d3648ce478e26a04c7e858a0a6e75ff3"},
+    {file = "psutil-7.1.0-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:8c70e113920d51e89f212dd7be06219a9b88014e63a4cec69b684c327bc474e3"},
+    {file = "psutil-7.1.0-cp36-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:7d4a113425c037300de3ac8b331637293da9be9713855c4fc9d2d97436d7259d"},
+    {file = "psutil-7.1.0-cp37-abi3-win32.whl", hash = "sha256:09ad740870c8d219ed8daae0ad3b726d3bf9a028a198e7f3080f6a1888b99bca"},
+    {file = "psutil-7.1.0-cp37-abi3-win_amd64.whl", hash = "sha256:57f5e987c36d3146c0dd2528cd42151cf96cd359b9d67cfff836995cc5df9a3d"},
+    {file = "psutil-7.1.0-cp37-abi3-win_arm64.whl", hash = "sha256:6937cb68133e7c97b6cc9649a570c9a18ba0efebed46d8c5dae4c07fa1b67a07"},
+    {file = "psutil-7.1.0.tar.gz", hash = "sha256:655708b3c069387c8b77b072fc429a57d0e214221d01c0a772df7dfedcb3bcd2"},
 ]
 
 [package.extras]
-test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"]
+dev = ["abi3audit", "black", "check-manifest", "coverage", "packaging", "pylint", "pyperf", "pypinfo", "pyreadline ; os_name == \"nt\"", "pytest", "pytest-cov", "pytest-instafail", "pytest-subtests", "pytest-xdist", "pywin32 ; os_name == \"nt\" and platform_python_implementation != \"PyPy\"", "requests", "rstcheck", "ruff", "setuptools", "sphinx", "sphinx_rtd_theme", "toml-sort", "twine", "virtualenv", "vulture", "wheel", "wheel ; os_name == \"nt\" and platform_python_implementation != \"PyPy\"", "wmi ; os_name == \"nt\" and platform_python_implementation != \"PyPy\""]
+test = ["pytest", "pytest-instafail", "pytest-subtests", "pytest-xdist", "pywin32 ; os_name == \"nt\" and platform_python_implementation != \"PyPy\"", "setuptools", "wheel ; os_name == \"nt\" and platform_python_implementation != \"PyPy\"", "wmi ; os_name == \"nt\" and platform_python_implementation != \"PyPy\""]
 
 [[package]]
 name = "ptyprocess"
@@ -1822,6 +2620,8 @@ version = "0.7.0"
 description = "Run a subprocess in a pseudo terminal"
 optional = false
 python-versions = "*"
+groups = ["temp"]
+markers = "sys_platform != \"win32\" and sys_platform != \"emscripten\""
 files = [
     {file = "ptyprocess-0.7.0-py2.py3-none-any.whl", hash = "sha256:4b41f3967fce3af57cc7e94b888626c18bf37a083e3651ca8feeb66d492fef35"},
     {file = "ptyprocess-0.7.0.tar.gz", hash = "sha256:5c5d0a3b48ceee0b48485e0c26037c0acd7d29765ca3fbb5cb3831d347423220"},
@@ -1829,13 +2629,14 @@ files = [
 
 [[package]]
 name = "pure-eval"
-version = "0.2.2"
+version = "0.2.3"
 description = "Safely evaluate AST nodes without side effects"
 optional = false
 python-versions = "*"
+groups = ["temp"]
 files = [
-    {file = "pure_eval-0.2.2-py3-none-any.whl", hash = "sha256:01eaab343580944bc56080ebe0a674b39ec44a945e6d09ba7db3cb8cec289350"},
-    {file = "pure_eval-0.2.2.tar.gz", hash = "sha256:2b45320af6dfaa1750f543d714b6d1c520a1688dec6fd24d339063ce0aaa9ac3"},
+    {file = "pure_eval-0.2.3-py3-none-any.whl", hash = "sha256:1db8e35b67b3d218d818ae653e27f06c3aa420901fa7b081ca98cbedc874e0d0"},
+    {file = "pure_eval-0.2.3.tar.gz", hash = "sha256:5f4e983f40564c576c7c8635ae88db5956bb2229d7e9237d03b3c0b0190eaf42"},
 ]
 
 [package.extras]
@@ -1843,24 +2644,27 @@ tests = ["pytest"]
 
 [[package]]
 name = "pycparser"
-version = "2.22"
+version = "2.23"
 description = "C parser in Python"
 optional = false
 python-versions = ">=3.8"
+groups = ["temp"]
+markers = "implementation_name == \"pypy\""
 files = [
-    {file = "pycparser-2.22-py3-none-any.whl", hash = "sha256:c3702b6d3dd8c7abc1afa565d7e63d53a1d0bd86cdc24edd75470f4de499cfcc"},
-    {file = "pycparser-2.22.tar.gz", hash = "sha256:491c8be9c040f5390f5bf44a5b07752bd07f56edf992381b05c701439eec10f6"},
+    {file = "pycparser-2.23-py3-none-any.whl", hash = "sha256:e5c6e8d3fbad53479cab09ac03729e0a9faf2bee3db8208a550daf5af81a5934"},
+    {file = "pycparser-2.23.tar.gz", hash = "sha256:78816d4f24add8f10a06d6f05b4d424ad9e96cfebf68a4ddc99c65c0720d00c2"},
 ]
 
 [[package]]
 name = "pygments"
-version = "2.18.0"
+version = "2.19.2"
 description = "Pygments is a syntax highlighting package written in Python."
 optional = false
 python-versions = ">=3.8"
+groups = ["dev", "docs", "temp"]
 files = [
-    {file = "pygments-2.18.0-py3-none-any.whl", hash = "sha256:b8e6aca0523f3ab76fee51799c488e38782ac06eafcf95e7ba832985c8e7b13a"},
-    {file = "pygments-2.18.0.tar.gz", hash = "sha256:786ff802f32e91311bff3889f6e9a86e81505fe99f2735bb6d60ae0c5004f199"},
+    {file = "pygments-2.19.2-py3-none-any.whl", hash = "sha256:86540386c03d588bb81d44bc3928634ff26449851e99741617ecb9037ee5ec0b"},
+    {file = "pygments-2.19.2.tar.gz", hash = "sha256:636cb2477cec7f8952536970bc533bc43743542f70392ae026374600add5b887"},
 ]
 
 [package.extras]
@@ -1868,13 +2672,14 @@ windows-terminal = ["colorama (>=0.4.6)"]
 
 [[package]]
 name = "pyparsing"
-version = "3.1.2"
-description = "pyparsing module - Classes and methods to define and execute parsing grammars"
+version = "3.2.5"
+description = "pyparsing - Classes and methods to define and execute parsing grammars"
 optional = false
-python-versions = ">=3.6.8"
+python-versions = ">=3.9"
+groups = ["main"]
 files = [
-    {file = "pyparsing-3.1.2-py3-none-any.whl", hash = "sha256:f9db75911801ed778fe61bb643079ff86601aca99fcae6345aa67292038fb742"},
-    {file = "pyparsing-3.1.2.tar.gz", hash = "sha256:a1bac0ce561155ecc3ed78ca94d3c9378656ad4c94c1270de543f621420f94ad"},
+    {file = "pyparsing-3.2.5-py3-none-any.whl", hash = "sha256:e38a4f02064cf41fe6593d328d0512495ad1f3d8a91c4f73fc401b3079a59a5e"},
+    {file = "pyparsing-3.2.5.tar.gz", hash = "sha256:2df8d5b7b2802ef88e8d016a2eb9c7aeaa923529cd251ed0fe4608275d4105b6"},
 ]
 
 [package.extras]
@@ -1882,43 +2687,47 @@ diagrams = ["jinja2", "railroad-diagrams"]
 
 [[package]]
 name = "pytest"
-version = "8.2.2"
+version = "8.4.2"
 description = "pytest: simple powerful testing with Python"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
+groups = ["dev"]
 files = [
-    {file = "pytest-8.2.2-py3-none-any.whl", hash = "sha256:c434598117762e2bd304e526244f67bf66bbd7b5d6cf22138be51ff661980343"},
-    {file = "pytest-8.2.2.tar.gz", hash = "sha256:de4bb8104e201939ccdc688b27a89a7be2079b22e2bd2b07f806b6ba71117977"},
+    {file = "pytest-8.4.2-py3-none-any.whl", hash = "sha256:872f880de3fc3a5bdc88a11b39c9710c3497a547cfa9320bc3c5e62fbf272e79"},
+    {file = "pytest-8.4.2.tar.gz", hash = "sha256:86c0d0b93306b961d58d62a4db4879f27fe25513d4b969df351abdddb3c30e01"},
 ]
 
 [package.dependencies]
-colorama = {version = "*", markers = "sys_platform == \"win32\""}
-exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""}
-iniconfig = "*"
-packaging = "*"
-pluggy = ">=1.5,<2.0"
+colorama = {version = ">=0.4", markers = "sys_platform == \"win32\""}
+exceptiongroup = {version = ">=1", markers = "python_version < \"3.11\""}
+iniconfig = ">=1"
+packaging = ">=20"
+pluggy = ">=1.5,<2"
+pygments = ">=2.7.2"
 tomli = {version = ">=1", markers = "python_version < \"3.11\""}
 
 [package.extras]
-dev = ["argcomplete", "attrs (>=19.2)", "hypothesis (>=3.56)", "mock", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"]
+dev = ["argcomplete", "attrs (>=19.2)", "hypothesis (>=3.56)", "mock", "requests", "setuptools", "xmlschema"]
 
 [[package]]
 name = "pytest-cov"
-version = "5.0.0"
+version = "7.0.0"
 description = "Pytest plugin for measuring coverage."
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-pytest = ">=4.6"
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-testing = ["fields", "hunter", "process-tests", "pytest-xdist", "virtualenv"]
+testing = ["process-tests", "pytest-xdist", "virtualenv"]
 
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 name = "python-dateutil"
@@ -1926,6 +2735,7 @@ version = "2.9.0.post0"
 description = "Extensions to the standard Python datetime module"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
+groups = ["main", "temp"]
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@@ -1936,217 +2746,257 @@ six = ">=1.5"
 
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 name = "snowballstemmer"
-version = "2.2.0"
-description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms."
+version = "3.0.1"
+description = "This package provides 32 stemmers for 30 languages generated from Snowball algorithms."
 optional = false
-python-versions = "*"
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*"
+groups = ["docs"]
 files = [
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+    {file = "snowballstemmer-3.0.1-py3-none-any.whl", hash = "sha256:6cd7b3897da8d6c9ffb968a6781fa6532dce9c3618a4b127d920dab764a19064"},
+    {file = "snowballstemmer-3.0.1.tar.gz", hash = "sha256:6d5eeeec8e9f84d4d56b847692bacf79bc2c8e90c7f80ca4444ff8b6f2e52895"},
 ]
 
 [[package]]
@@ -2283,6 +3243,7 @@ version = "7.2.6"
 description = "Python documentation generator"
 optional = false
 python-versions = ">=3.9"
+groups = ["docs"]
 files = [
     {file = "sphinx-7.2.6-py3-none-any.whl", hash = "sha256:1e09160a40b956dc623c910118fa636da93bd3ca0b9876a7b3df90f07d691560"},
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@@ -2294,7 +3255,6 @@ babel = ">=2.9"
 colorama = {version = ">=0.4.5", markers = "sys_platform == \"win32\""}
 docutils = ">=0.18.1,<0.21"
 imagesize = ">=1.3"
-importlib-metadata = {version = ">=4.8", markers = "python_version < \"3.10\""}
 Jinja2 = ">=3.0"
 packaging = ">=21.0"
 Pygments = ">=2.14"
@@ -2318,6 +3278,7 @@ version = "0.12"
 description = "Execute code blocks in Sphinx and display the output"
 optional = false
 python-versions = "*"
+groups = ["docs"]
 files = [
     {file = "sphinx-exec-code-0.12.tar.gz", hash = "sha256:6b964eaa3d170d8a44e4db698b25e64c03a65681392f45a8f4a51c09f0ee70c9"},
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@@ -2329,6 +3290,7 @@ version = "1.3.0"
 description = "Read the Docs theme for Sphinx"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
+groups = ["docs"]
 files = [
     {file = "sphinx_rtd_theme-1.3.0-py2.py3-none-any.whl", hash = "sha256:46ddef89cc2416a81ecfbeaceab1881948c014b1b6e4450b815311a89fb977b0"},
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@@ -2344,49 +3306,52 @@ dev = ["bump2version", "sphinxcontrib-httpdomain", "transifex-client", "wheel"]
 
 [[package]]
 name = "sphinxcontrib-applehelp"
-version = "1.0.8"
+version = "2.0.0"
 description = "sphinxcontrib-applehelp is a Sphinx extension which outputs Apple help books"
 optional = false
 python-versions = ">=3.9"
+groups = ["docs"]
 files = [
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+    {file = "sphinxcontrib_applehelp-2.0.0-py3-none-any.whl", hash = "sha256:4cd3f0ec4ac5dd9c17ec65e9ab272c9b867ea77425228e68ecf08d6b28ddbdb5"},
+    {file = "sphinxcontrib_applehelp-2.0.0.tar.gz", hash = "sha256:2f29ef331735ce958efa4734873f084941970894c6090408b079c61b2e1c06d1"},
 ]
 
 [package.extras]
-lint = ["docutils-stubs", "flake8", "mypy"]
+lint = ["mypy", "ruff (==0.5.5)", "types-docutils"]
 standalone = ["Sphinx (>=5)"]
 test = ["pytest"]
 
 [[package]]
 name = "sphinxcontrib-devhelp"
-version = "1.0.6"
+version = "2.0.0"
 description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp documents"
 optional = false
 python-versions = ">=3.9"
+groups = ["docs"]
 files = [
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+    {file = "sphinxcontrib_devhelp-2.0.0-py3-none-any.whl", hash = "sha256:aefb8b83854e4b0998877524d1029fd3e6879210422ee3780459e28a1f03a8a2"},
+    {file = "sphinxcontrib_devhelp-2.0.0.tar.gz", hash = "sha256:411f5d96d445d1d73bb5d52133377b4248ec79db5c793ce7dbe59e074b4dd1ad"},
 ]
 
 [package.extras]
-lint = ["docutils-stubs", "flake8", "mypy"]
+lint = ["mypy", "ruff (==0.5.5)", "types-docutils"]
 standalone = ["Sphinx (>=5)"]
 test = ["pytest"]
 
 [[package]]
 name = "sphinxcontrib-htmlhelp"
-version = "2.0.5"
+version = "2.1.0"
 description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files"
 optional = false
 python-versions = ">=3.9"
+groups = ["docs"]
 files = [
-    {file = "sphinxcontrib_htmlhelp-2.0.5-py3-none-any.whl", hash = "sha256:393f04f112b4d2f53d93448d4bce35842f62b307ccdc549ec1585e950bc35e04"},
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+    {file = "sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl", hash = "sha256:166759820b47002d22914d64a075ce08f4c46818e17cfc9470a9786b759b19f8"},
+    {file = "sphinxcontrib_htmlhelp-2.1.0.tar.gz", hash = "sha256:c9e2916ace8aad64cc13a0d233ee22317f2b9025b9cf3295249fa985cc7082e9"},
 ]
 
 [package.extras]
-lint = ["docutils-stubs", "flake8", "mypy"]
+lint = ["mypy", "ruff (==0.5.5)", "types-docutils"]
 standalone = ["Sphinx (>=5)"]
 test = ["html5lib", "pytest"]
 
@@ -2396,6 +3361,7 @@ version = "4.1"
 description = "Extension to include jQuery on newer Sphinx releases"
 optional = false
 python-versions = ">=2.7"
+groups = ["docs"]
 files = [
     {file = "sphinxcontrib-jquery-4.1.tar.gz", hash = "sha256:1620739f04e36a2c779f1a131a2dfd49b2fd07351bf1968ced074365933abc7a"},
     {file = "sphinxcontrib_jquery-4.1-py2.py3-none-any.whl", hash = "sha256:f936030d7d0147dd026a4f2b5a57343d233f1fc7b363f68b3d4f1cb0993878ae"},
@@ -2410,6 +3376,7 @@ version = "1.0.1"
 description = "A sphinx extension which renders display math in HTML via JavaScript"
 optional = false
 python-versions = ">=3.5"
+groups = ["docs"]
 files = [
     {file = "sphinxcontrib-jsmath-1.0.1.tar.gz", hash = "sha256:a9925e4a4587247ed2191a22df5f6970656cb8ca2bd6284309578f2153e0c4b8"},
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@@ -2420,33 +3387,35 @@ test = ["flake8", "mypy", "pytest"]
 
 [[package]]
 name = "sphinxcontrib-qthelp"
-version = "1.0.7"
+version = "2.0.0"
 description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp documents"
 optional = false
 python-versions = ">=3.9"
+groups = ["docs"]
 files = [
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-    {file = "sphinxcontrib_qthelp-1.0.7.tar.gz", hash = "sha256:053dedc38823a80a7209a80860b16b722e9e0209e32fea98c90e4e6624588ed6"},
+    {file = "sphinxcontrib_qthelp-2.0.0-py3-none-any.whl", hash = "sha256:b18a828cdba941ccd6ee8445dbe72ffa3ef8cbe7505d8cd1fa0d42d3f2d5f3eb"},
+    {file = "sphinxcontrib_qthelp-2.0.0.tar.gz", hash = "sha256:4fe7d0ac8fc171045be623aba3e2a8f613f8682731f9153bb2e40ece16b9bbab"},
 ]
 
 [package.extras]
-lint = ["docutils-stubs", "flake8", "mypy"]
+lint = ["mypy", "ruff (==0.5.5)", "types-docutils"]
 standalone = ["Sphinx (>=5)"]
-test = ["pytest"]
+test = ["defusedxml (>=0.7.1)", "pytest"]
 
 [[package]]
 name = "sphinxcontrib-serializinghtml"
-version = "1.1.10"
+version = "2.0.0"
 description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)"
 optional = false
 python-versions = ">=3.9"
+groups = ["docs"]
 files = [
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+    {file = "sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl", hash = "sha256:6e2cb0eef194e10c27ec0023bfeb25badbbb5868244cf5bc5bdc04e4464bf331"},
+    {file = "sphinxcontrib_serializinghtml-2.0.0.tar.gz", hash = "sha256:e9d912827f872c029017a53f0ef2180b327c3f7fd23c87229f7a8e8b70031d4d"},
 ]
 
 [package.extras]
-lint = ["docutils-stubs", "flake8", "mypy"]
+lint = ["mypy", "ruff (==0.5.5)", "types-docutils"]
 standalone = ["Sphinx (>=5)"]
 test = ["pytest"]
 
@@ -2456,6 +3425,7 @@ version = "0.6.3"
 description = "Extract data from python stack frames and tracebacks for informative displays"
 optional = false
 python-versions = "*"
+groups = ["temp"]
 files = [
     {file = "stack_data-0.6.3-py3-none-any.whl", hash = "sha256:d5558e0c25a4cb0853cddad3d77da9891a08cb85dd9f9f91b9f8cd66e511e695"},
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@@ -2475,6 +3445,7 @@ version = "0.10.2"
 description = "Python Library for Tom's Obvious, Minimal Language"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
+groups = ["docs"]
 files = [
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@@ -2482,33 +3453,89 @@ files = [
 
 [[package]]
 name = "tomli"
-version = "2.0.1"
+version = "2.3.0"
 description = "A lil' TOML parser"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
+groups = ["dev"]
+markers = "python_version == \"3.10\""
+files = [
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 [[package]]
@@ -2517,6 +3544,7 @@ version = "5.14.3"
 description = "Traitlets Python configuration system"
 optional = false
 python-versions = ">=3.8"
+groups = ["temp"]
 files = [
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@@ -2526,112 +3554,108 @@ files = [
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 test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<8.2)", "pytest-mock", "pytest-mypy-testing"]
 
-[[package]]
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-python-versions = ">=3.5.3"
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-[package.extras]
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-test = ["mypy", "pytest", "typing-extensions"]
-
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+python-versions = ">=3.9"
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 [[package]]
 name = "tzdata"
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+version = "2025.2"
 description = "Provider of IANA time zone data"
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 python-versions = ">=2"
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 ]
 
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 description = "HTTP library with thread-safe connection pooling, file post, and more."
 optional = false
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 h2 = ["h2 (>=4,<5)"]
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 zstd = ["zstandard (>=0.18.0)"]
 
 [[package]]
 name = "virtualenv"
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 optional = false
-python-versions = ">=3.7"
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 [package.dependencies]
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 filelock = ">=3.12.2,<4"
 platformdirs = ">=3.9.1,<5"
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 [package.extras]
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 name = "vtk"
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 description = "VTK is an open-source toolkit for 3D computer graphics, image processing, and visualization"
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 python-versions = "*"
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 ]
 
 [package.dependencies]
@@ -2642,32 +3666,34 @@ numpy = ["numpy (>=1.9)"]
 web = ["wslink (>=1.0.4)"]
 
 [[package]]
-name = "wcwidth"
-version = "0.2.13"
-description = "Measures the displayed width of unicode strings in a terminal"
+name = "wadler-lindig"
+version = "0.1.7"
+description = "A Wadler–Lindig pretty-printer for Python."
 optional = false
-python-versions = "*"
+python-versions = ">=3.10"
+groups = ["temp"]
 files = [
-    {file = "wcwidth-0.2.13-py2.py3-none-any.whl", hash = "sha256:3da69048e4540d84af32131829ff948f1e022c1c6bdb8d6102117aac784f6859"},
-    {file = "wcwidth-0.2.13.tar.gz", hash = "sha256:72ea0c06399eb286d978fdedb6923a9eb47e1c486ce63e9b4e64fc18303972b5"},
+    {file = "wadler_lindig-0.1.7-py3-none-any.whl", hash = "sha256:e3ec83835570fd0a9509f969162aeb9c65618f998b1f42918cfc8d45122fe953"},
+    {file = "wadler_lindig-0.1.7.tar.gz", hash = "sha256:81d14d3fe77d441acf3ebd7f4aefac20c74128bf460e84b512806dccf7b2cd55"},
 ]
 
+[package.extras]
+dev = ["numpy", "pre-commit", "pytest"]
+docs = ["hippogriffe (==0.1.0)", "mkdocs (==1.6.1)", "mkdocs-include-exclude-files (==0.1.0)", "mkdocs-ipynb (==0.1.0)", "mkdocs-material (==9.6.7)", "mkdocstrings[python] (==0.28.3)", "pymdown-extensions (==10.14.3)"]
+
 [[package]]
-name = "zipp"
-version = "3.19.2"
-description = "Backport of pathlib-compatible object wrapper for zip files"
+name = "wcwidth"
+version = "0.2.14"
+description = "Measures the displayed width of unicode strings in a terminal"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.6"
+groups = ["temp"]
 files = [
-    {file = "zipp-3.19.2-py3-none-any.whl", hash = "sha256:f091755f667055f2d02b32c53771a7a6c8b47e1fdbc4b72a8b9072b3eef8015c"},
-    {file = "zipp-3.19.2.tar.gz", hash = "sha256:bf1dcf6450f873a13e952a29504887c89e6de7506209e5b1bcc3460135d4de19"},
+    {file = "wcwidth-0.2.14-py2.py3-none-any.whl", hash = "sha256:a7bb560c8aee30f9957e5f9895805edd20602f2d7f720186dfd906e82b4982e1"},
+    {file = "wcwidth-0.2.14.tar.gz", hash = "sha256:4d478375d31bc5395a3c55c40ccdf3354688364cd61c4f6adacaa9215d0b3605"},
 ]
 
-[package.extras]
-doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
-
 [metadata]
-lock-version = "2.0"
-python-versions = ">=3.9,<=3.11"
-content-hash = "bf6d611af8c5592e9ff64729b93bc0378a383b54e9b4294244a3d4f0cde0ff57"
+lock-version = "2.1"
+python-versions = ">=3.10,<4.0"
+content-hash = "ce2f1b836ab6c9308235b452eea66cbede8ec7d7fdecdbcc88d2bef437b03701"
diff --git a/pyproject.toml b/pyproject.toml
index 8bd9485..9761a0c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -11,12 +11,12 @@ documentation = "https://jax-sph.readthedocs.io/"
 repository = "https://github.com/tumaer/jax-sph"
 
 [tool.poetry.dependencies]
-python = ">=3.9,<=3.11"
+python = ">=3.10,<4.0"
 h5py = ">=3.9.0"
 pandas = ">=2.1.4" # for validation
 pyvista = ">=0.42.2" # for visualization
-jax = {version = "0.4.29", extras = ["cpu"]}
-jaxlib = "0.4.29"
+jax = {version = ">=0.6.2", extras = ["cpu"]}
+jaxlib = ">=0.6.2"
 omegaconf = ">=2.3.0"
 matscipy = ">=0.8.0"
 jraph = ">=0.0.6.dev0"  # for jax-md
diff --git a/requirements.txt b/requirements.txt
index 7bf65a2..b1cb49f 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,6 +1,6 @@
 absl-py>=2.1.0
 h5py
-jax[cpu]==0.4.29
+jax[cpu]>=0.6.2
 jraph>=0.0.6.dev0
 omegaconf
 pandas