Our Wiki and main public documentation repository.

set of helper tools for bu-isciii management of its core services portfolio.

Repository to host tool-specific module files for the Nextflow DSL2 community!

Assembly and intrahost/low-frequency variant calling for viral samples

set of helper tools for the assembly of the different elements in the RELECOV platform (Spanish Network for genomic surveillance of SARS-Cov-2) as data download, processing, validation and upload t…

Galaxy training for virology profiles

This repo contains all the resources needed to follow the virology training to analyze viral sequencing data.

genomic surveillance web platform for respiratory viruses used by RELECOV network in Spain

In this training course you will find theory and practice material for introducing yourself to the basics of high throughput sequencing data analysis.

New pikavirus in dsl2

cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.

bcRflow: A Nextflow Pipeline for the Comprehensive and Reproducible Analysis of B-Cell Receptor Repertoires from Transcriptomic Data

caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models

Scripts used to analyze the metagenomic data, build the random forest classifier and the patient similarity network, and perform the LEfSe analysis on CRC data