FreeFem · sgarnotel · Sep 4, 2018 · Sep 4, 2018
diff --git a/LICENSE.md b/LICENSE.md
diff --git a/configure.ac b/configure.ac
@@ -27,7 +27,7 @@ dnl AC_CONFIG_SRCDIR(src/FreeFem++-CoCoa)
 # ALH - 10/9/13 - FFCS needs to skip this automake version requirement when compiling on older platforms (eg cygwin or
 # last Ubuntu LTS). So we fix a low hardcoded requirement and test for higher versions when not in FFCS.
 
-AM_INIT_AUTOMAKE(1.11 dist-zip)
+AM_INIT_AUTOMAKE(1.11 dist-zip foreign)
 
 if test "$enable_ffcs" != yes
 then

diff --git a/0ldUserReadMe.txt → doc/0ldUserReadMe.txt b/0ldUserReadMe.txt → doc/0ldUserReadMe.txt
diff --git a/BUGS → doc/BUGS b/BUGS → doc/BUGS
diff --git a/COPYING → doc/COPYING b/COPYING → doc/COPYING
diff --git a/COPYRIGHT → doc/COPYRIGHT b/COPYRIGHT → doc/COPYRIGHT
diff --git a/ChangeLog → doc/ChangeLog b/ChangeLog → doc/ChangeLog
diff --git a/HISTORY → doc/HISTORY b/HISTORY → doc/HISTORY
diff --git a/HISTORY_BEFORE_2005 → doc/HISTORY_BEFORE_2005 b/HISTORY_BEFORE_2005 → doc/HISTORY_BEFORE_2005
diff --git a/INNOVATION → doc/INNOVATION b/INNOVATION → doc/INNOVATION
diff --git a/INSTALL → doc/INSTALL b/INSTALL → doc/INSTALL
diff --git a/INSTALL-MacOSX → doc/INSTALL-MacOSX b/INSTALL-MacOSX → doc/INSTALL-MacOSX
diff --git a/NEWS → doc/NEWS b/NEWS → doc/NEWS
diff --git a/README → doc/README b/README → doc/README
diff --git a/README_ARPACK.md → doc/README_ARPACK.md b/README_ARPACK.md → doc/README_ARPACK.md
diff --git a/README_COMPILATION.md → doc/README_COMPILATION.md b/README_COMPILATION.md → doc/README_COMPILATION.md
diff --git a/README_GIT.md → doc/README_GIT.md b/README_GIT.md → doc/README_GIT.md
diff --git a/README_MAC.md → doc/README_MAC.md b/README_MAC.md → doc/README_MAC.md
diff --git a/README_WINDOWS.md → doc/README_WINDOWS.md b/README_WINDOWS.md → doc/README_WINDOWS.md
diff --git a/README_XCODE.md → doc/README_XCODE.md b/README_XCODE.md → doc/README_XCODE.md
diff --git a/TODO → doc/TODO b/TODO → doc/TODO
diff --git a/Doxyfile → etc/doxygen/Doxyfile b/Doxyfile → etc/doxygen/Doxyfile
@@ -678,7 +678,7 @@ WARN_LOGFILE           =
 # directories like "/usr/src/myproject". Separate the files or directories
 # with spaces.
 
-INPUT                  = mainpage.dox \
+INPUT                  = etc/doxygen/mainpage.dox \
                          src \
                          examples++-tutorial \
                          src/lglib/lg.ypp
@@ -901,7 +901,7 @@ GENERATE_HTML          = YES
 # If a relative path is entered the value of OUTPUT_DIRECTORY will be
 # put in front of it. If left blank `html' will be used as the default path.
 
-HTML_OUTPUT            = html
+HTML_OUTPUT            = etc/Doxygen/html
 
 # The HTML_FILE_EXTENSION tag can be used to specify the file extension for
 # each generated HTML page (for example: .htm,.php,.asp). If it is left blank

diff --git a/mainpage.dox → etc/doxygen/mainpage.dox b/mainpage.dox → etc/doxygen/mainpage.dox
diff --git a/ff++.htmx → etc/history/ff++.htmx b/ff++.htmx → etc/history/ff++.htmx
diff --git a/edp.nedit → etc/lexers/edp.nedit b/edp.nedit → etc/lexers/edp.nedit
diff --git a/logo.bmp → etc/logo/logo.bmp b/logo.bmp → etc/logo/logo.bmp
diff --git a/logo.ico → etc/logo/logo.ico b/logo.ico → etc/logo/logo.ico
diff --git a/tools/.uncrustify → etc/tools/.uncrustify b/tools/.uncrustify → etc/tools/.uncrustify
diff --git a/tools/deployUbuntu1604.sh → etc/tools/deployUbuntu1604.sh b/tools/deployUbuntu1604.sh → etc/tools/deployUbuntu1604.sh
diff --git a/tools/deployUbuntu1804.sh → etc/tools/deployUbuntu1804.sh b/tools/deployUbuntu1804.sh → etc/tools/deployUbuntu1804.sh
diff --git a/tools/srcHeader.txt → etc/tools/srcHeader.txt b/tools/srcHeader.txt → etc/tools/srcHeader.txt
diff --git a/examples/TODO b/examples/TODO
diff --git a/lib/TODO b/lib/TODO
diff --git a/plugins/TODO b/plugins/TODO
diff --git a/src/Carbon.r b/src/Carbon.r
diff --git a/src/glx/Makefile.am b/src/glx/Makefile.am
diff --git a/src/iml/Makefile.am b/src/iml/Makefile.am
diff --git a/src/iml/bicg.h b/src/iml/bicg.h
diff --git a/src/iml/bicgstab.h b/src/iml/bicgstab.h
diff --git a/src/iml/cg.h b/src/iml/cg.h
diff --git a/src/iml/cgs.h b/src/iml/cgs.h