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Achievement: YOLOAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Achievements

Achievement: YOLOAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

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@arcadelab

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benjamindkilleen/README.md

Hi! Welcome to my GitHub. For more info about me, please visit my website.

I'm a researcher who uses GitHub extensively. Many projects have multiple repositories, which I've outlined here. To request access to private repositories, if you are a student or collaborator of mine, please do so via this form. Do not request access via email or GitHub, as it may be overlooked.

These are grouped by project and listed roughly in order of importance/recency.

Libraries

These are complete libraries that are used in multiple projects.

Link to MICCAI 2019 DeepDRR paper.

Repository Description Note
deepdrr X-ray simulation framework. Public. dev branch contains latest features.
killeengeo Python library for 2D, 3D geometry. Public
loopx Code for controlling the Loop-X and reading Loop-X images. Private
tull Creating primitives for figures in talks and papers. Public

FluoroSAM

Link to MICCAI 2025 FluoroSAM paper.

Repository Description Note
fluorosam Main public codebase for FluoroSAM. Public
fluoroseg Code for reading and using the FluoroSeg dataset. Public
fluoroseg data Huggingface Dataset download. Public
nmdid-utils Utilities for processing NMDID CT data. Public
prephix Simulation and training code for FluoroSAM. Private
nmdid-arcade Original implementation for NMDID processing. Private

Pelphix

Link to MICCAI 2023 Paper

Repository Description Note
pelphix Main codebase for Pelphix simulation and training. Public
perphix Code for reading and using data in the Pelphix format, for percutaneous pelvic fixation. Public

Real-time Integrated X-ray Studies

These repositories support real-time integrated studies with the Loop-X robot, voice control, and/or augmented reality.

Repository Description Note
IPCAI-pelvic-corridors Implementation for pelvic corridor studies in IPCAI 2023. Public, standalone.
corridors Main server for integration studies. Contains triangulation, model inference code. Also contains the GUI code for the original IPCAI 2023 paper. Private
xeno Voice control client (e.g. laptop in the room) for IPCAI 2023 (main branch), 2024 (patient_model_client_2 branch) papers. Private
phelix Used to train the Corridors X-ray model. Relies on perphix for data format. Private

Simulated FluoroSAM Voice Control Demo

Uses DeepDRR to simulate X-ray images using FluoroSAM model for voice control, similar to corridors but without Loop-X.

Repository Description Note
fluorosam-vui-demo-server Server for voice control simulation Demo. Private
fluorosam-vui-demo Laptop-side client for voice control simulation Demo. Has good GUI for real-time speech-to-text. Private

Full-body CT Diffusion Project

2024 - 2025 with Bohua Wan and Aditya Kulkarni. Link to paper.

Repository Description Note
ct-diffusion Main codebase for CT Diffusion project. Private. Use branch oracle_cloud.
nmdid-arcade Fork of nmdid-arcade for CT Diffusion project. Private

VRPelviSim

CIS 2024 Project. Adds more intuitive controls and a tutorial to PelvisVR.

Repository Description Note
vrpelvisim-surgical-room Unity client. Private
vrpelvisim-deepdrr-zmq ZMQ server. Public

PelvisVR

CIS 2023 Project. Link to IPCAI 2024 Surgeons Shoes Paper

Repository Description Note
vr_surgical_room PelvisVR Unity Client Private
deepdrr_zmq DeepDRR ZMQ Server for PelvisVR Public

X-Pose

2022 AE-CAI paper "Mixed reality interfaces for achieving desired views with robotic X-ray systems." Link to paper.

Does not directly control the Loop-X, but was a precursor to the real-time integrated studies.

Repository Description Note
X-Pose-Project Unity client for X-Pose project. Private
x-pose DeepDRR ZMQ server for X-Pose project. Private

Pinned Loading

  1. pelphix pelphix Public

    Surgical phase recognition from X-ray images in percutaneous pelvic fixation (MICCAI 2023)

    Python 4 1

  2. arcadelab/deepdrr arcadelab/deepdrr Public

    Code for "DeepDRR: A Catalyst for Machine Learning in Fluoroscopy-guided Procedures". https://arxiv.org/abs/1803.08606

    Python 254 65

  3. killeengeo killeengeo Public

    2D and 3D geometry in python.

    Python 4 3

  4. IPCAI-pelvic-corridors IPCAI-pelvic-corridors Public

    Code for our IPCAI 2023 paper: "An Autonomous X-ray Image Acquisition and Interpretation System for Assisting Percutaneous Pelvic Fracture Fixation."

    Python 3

  5. arcadelab/perphix arcadelab/perphix Public

    Utilities and documentation for working with X-ray Workflows datasets.

    Python 1

  6. SPIE-2022_cortical-breach-anticipation SPIE-2022_cortical-breach-anticipation Public

    Code for our paper at SPIE Medical Imaging 2022: "Toward Perception-based Anticipation of Cortical Breach During K-wire Fixation of the Pelvis"

    Python 4