Shaokai/fix install #34
Closed
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
…ndencies. Added installation script
…into shaokai/fix_install
Update README.md
MMathisLab
reviewed
Jun 8, 2024
| - AmadeusGPT is a Python package hosted on `pypi`. You can create a virtual env (conda, etc, see below*) or Docker and run: | ||
| ```python | ||
| pip install 'amadeusgpt[streamlit]' | ||
| - We prepare installation script install.sh. Make sure you modify the bash script to fit your own. |
Member
There was a problem hiding this comment.
why are you deleting the pypi package? it is on pypi ;)
Collaborator
Author
There was a problem hiding this comment.
Because I realize that, at least when I was working on it, one can't install deeplabcut with pip install alone. It needs to use the conda yaml to first install hdf5 and many users don't understand why that's the case. So inside the installation script, I force users to create a conda env via conda yaml and then pip install.
The installation script
source /Users/shaokaiye/miniforge3/bin/activate
conda env create -f conda/amadesuGPT.yml
conda activate amadeusgpt
pip install -e .[streamlit]
In colab, because hdf5 is pre-installed, then they will run into slightly different problem such as pytable vs. tables from deeplabcut. I overheard you guys might have solved it. Let me know if there is better way to solve it.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Removed modules that are not needed
Removed requirements that are not needed
Added installation script to enforce that one needs to install conda yaml before running pip install. This is because library like hdf5's dependency cannot be addressed by pip install. Therefore people run into hdf5 dependency missing after even after pip install