Moved mypy to use local hook to unsilence it on missing dependenc…

…ies (#1055)

.github/workflows/tests.yml

@@ -20,6 +20,13 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+      - uses: astral-sh/setup-uv@v6
+        with:
+          enable-cache: true
+      - run: echo "UV_PROJECT_ENVIRONMENT=$(python -c "import sysconfig; print(sysconfig.get_config_var('prefix'))")" >> $GITHUB_ENV
+      - run: uv python pin ${{ matrix.python-version }} # uv requires .python-version to match OS Python: https://github.com/astral-sh/uv/issues/11389
+      - run: uv sync --python-preference only-system
+      - run: git checkout .python-version # For clean git diff given `pre-commit run --show-diff-on-failure`
       - uses: pre-commit/[email protected]
       - uses: pre-commit-ci/[email protected]
         if: always()

.pre-commit-config.yaml

@@ -87,30 +87,10 @@ repos:
     rev: 0.0.10
     hooks:
       - id: markdown-toc-creator
-  - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.17.1
+  - repo: local # Use local so we can inspect paperqa.version
     hooks:
       - id: mypy
-        args: [--pretty, --ignore-missing-imports]
-        additional_dependencies:
-          - aiohttp>=3.10.6 # Match pyproject.toml
-          - PyMuPDF>=1.24.12
-          - anyio
-          - fhlmi>=0.28 # Match pyproject.toml
-          - fhaviary[llm]>=0.20 # Match pyproject.toml
-          - ldp>=0.25.0 # Match pyproject.toml
-          - html2text
-          - httpx
-          - pybtex
-          - numpy
-          - pydantic~=2.11 # Match pyproject.toml
-          - pydantic-settings
-          - qdrant-client
-          - rich
-          - tantivy>=0.22.2 # Match pyproject.toml
-          - tenacity
-          - tiktoken>=0.4.0 # Match pyproject.toml
-          - types-setuptools
-          - types-PyYAML
-          - sentence-transformers
-          - pyzotero
+        name: mypy
+        entry: mypy
+        language: system
+        types_or: [python, pyi]