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12 stars written in Jupyter Notebook
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BoltzGen: Toward Universal Binder Design

Jupyter Notebook 918 227 Updated Apr 30, 2026

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

Jupyter Notebook 686 168 Updated Feb 27, 2026

Predicting high-fitness mutations based on protein inverse folding models

Jupyter Notebook 239 35 Updated Sep 30, 2025

Masif seed paper repository

Jupyter Notebook 172 39 Updated Sep 22, 2025

Making Protein Language Modeling Accessible to All Biologists

Jupyter Notebook 161 19 Updated Apr 27, 2026

HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles

Jupyter Notebook 74 12 Updated Jul 2, 2025

Latents-based conformational control in OpenFold3.

Jupyter Notebook 54 2 Updated Apr 21, 2026

Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"

Jupyter Notebook 48 3 Updated Aug 5, 2025

Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models

Jupyter Notebook 43 15 Updated Dec 16, 2024

Deep Learning Library and Benchmark for Protein Sequence Learning (Bioinformatics 2025)

Jupyter Notebook 43 2 Updated Mar 30, 2026

Code supporting the Protein Design Archive (PDA) database publication

Jupyter Notebook 16 3 Updated Feb 5, 2026
Jupyter Notebook 8 2 Updated Mar 20, 2026