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BindCraft modified to make PyRosetta use and installation optional: no license needed
Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (built on La-Proteina) with inference-time optimization.
DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
A geometric foundation model for enzyme retrieval with evolutionary insights.
A simple and effective tool that allows you to completely disable or re-enable Windows Updates and related services with a single click.
An accurate and trainable end-to-end protein-ligand docking framework
Structural Quality Assessment for Biomolecular Structure Prediction Models
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
An accurate and efficient protein sequence design approach
Claude Code is an agentic coding tool that lives in your terminal, understands your codebase, and helps you code faster by executing routine tasks, explaining complex code, and handling git workflo…
design pipeline for protein, nucleic acid, and small molecule
de novo design of high affinity biological binders
Automatic oligonucleotide design for PCR-based gene synthesis
ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
Official repository of "ODesign: A World Model for Biomolecular Interaction Design"
Repository for the BoltzGen model
dockerfile to compile a docker for Rfdiffusion on RTX5090
HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structures by leveraging the forward pass of a structure prediction m…
A transmembrane helix finder in Python 3.
Code of our JC paper: "Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted contact map"