Parser for the metadata. #45
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Merge branch 'feature/phyloparser' into feature/linkmetadata
| * Created by ravishivam on 4-5-16. | ||
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| public interface Data { | ||
| } |
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An interface without methods is usually not what you want. Ideally every method of the implementations of an interface should override the interface methods. Also, Data is not a clear name.
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Specimen is NOT a replacement for segment. A specimen is whom a certain genome belongs to. The genome is contructed by a serie of segments. Thus segments are pieces of a genome that belongs to a certain specimen. The specimen class tells something about the person that the genome belongs to i.e. age, gender, HIV status etc. |
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Yes. It is. Because Segment now contains a List with specimen (genomes) it belongs to. And that can directly be linked to a certain specimen. The name of the specimen (format: TKxxxx) is the key with which you can access all the information of that specimen in the SpecimenMap class |
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LGTM |
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LGTM |
Parses specifications of a certain specimen and stores into hash map.