🏆 A ranked list of awesome machine learning Python libraries. Updated weekly.

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

UCSC command line bioinformatic utilities

various tools to download, convert and process the full text of scientific articles

All source code of the crispor.org website

Code for the CRISPOR article, all data and code to create figures and analysis

personal website + blog for every github user

A personal website template that's not a pain in the ass to setup and use

free to use portfolio templates

DNA-Fountain

Linux command line scripts to be used with poRe

Script for downloading Coursera.org videos and naming them.

A cheat sheet for bash commands.

A collection of code examples as well as presentations for training purposes

Repository for participants of the "Python for systems programming" training

Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data

Program for the prediction of BE-splice sgRNAs for base editor mediated knockout

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

Computational analysis for the transcriptional recording project

FASTA/FASTQ pre-processing programs

Tools for ingesting and analyzing spacer acquisitions into E. coli CRISPR arrays. Code used in paper "Recording gene expression order in DNA by CRISPR addition of retron barcodes"

Common BASH routines for computational biology

Basic implementations of standard cryptography algorithms, like AES and SHA-1.

Adapters for trimming

My Personal Website

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.