Reaction complexes v2 #373
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Complex stoichiometric matrices, reaction rates etc functions
adding some tests for functions related to complex-based matrices of reaction network
export the functions reaction_complexes, reaction_rates, complex_stoich_matrix, complex_incidence_matrix, complex_outgoing_matrix
adding some more tests to see whether Z*B == netstoichmat(rn)'
revising function definitions of complex based representations based
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It this looks good to you I'll make some more tweaks and merge if tests pass. |
Hi @isaacsas , Next PRs could involve plotting visualising these complexes on graphs and Loading reaction system based on Z, B matrices as function arguments ? I have small demos of these. |
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I think creating a Adding visualization here makes sense. |
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@yewalenikhil65 nice job on this one! |
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It would also be good to add a new tutorial showing how to use these matrices to do something interesting (maybe once you add the visualization features). |
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@isaacsas Thanks sir for your inputs. |
@yewalenikhil65 so as not to pollute your original PR I created a branch off it and made updates. What do you think? The tests you added now all pass for me.