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Merged
BryanRumsey merged 14 commits into from
Apr 27, 2023
Merged

v1.2.2 Release #353

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f48e1f8
Added scons dependency
BryanRumsey Apr 18, 2023
5eaf16b
Updated the version to v1.2.2
BryanRumsey Apr 18, 2023
384a84a
Latest docs build.
github-actions[bot] Apr 18, 2023
a6b0c78
Latest docs build.
github-actions[bot] Apr 18, 2023
4ce10e3
Reorganized integration tests to match unit test structure.
BryanRumsey Apr 27, 2023
e6b0401
Added the spatial birth death model to testing models.
BryanRumsey Apr 27, 2023
f3c0f6e
Added system test for testing compiler.
BryanRumsey Apr 27, 2023
bf28298
Added system tests to coverage.
BryanRumsey Apr 27, 2023
18b043a
Pylint updates.
BryanRumsey Apr 27, 2023
2d91d1e
Merge pull request #355 from StochSS/system-testing
briandrawert Apr 27, 2023
4409fab
Latest docs build.
github-actions[bot] Apr 27, 2023
65e84de
Fixed imports.
BryanRumsey Apr 27, 2023
6803135
Merge pull request #356 from StochSS/system-testing
briandrawert Apr 27, 2023
ff3d2c4
Latest docs build.
github-actions[bot] Apr 27, 2023
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@github-actions
github-actions[bot] committed Apr 18, 2023
commit 384a84a3ba2856638a89caa7e356960ae63f7008
2 changes: 1 addition & 1 deletion docs/build/html/.buildinfo
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# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 594471ec9654e1c403c8655ed91ad300
config: cda440a90b02806b8875d767ce4b3688
tags: 645f666f9bcd5a90fca523b33c5a78b7
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4 changes: 2 additions & 2 deletions docs/build/html/_modules/index.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Overview: module code &#8212; SpatialPy 1.2.1 documentation</title>
<title>Overview: module code &#8212; SpatialPy 1.2.2 documentation</title>
<link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
<link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
<link rel="stylesheet" type="text/css" href="../_static/css/spatialpy_alabaster_customizations.css" />
Expand Down Expand Up @@ -127,7 +127,7 @@ <h1>All modules for which code is available</h1>
<div class="clearer"></div>
</div>
<div class="footer">
&copy;Copyright (C) 2019-2022.
&copy;Copyright (C) 2019-2023.

|
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6 changes: 3 additions & 3 deletions docs/build/html/_modules/spatialpy/core/boundarycondition.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>spatialpy.core.boundarycondition &#8212; SpatialPy 1.2.1 documentation</title>
<title>spatialpy.core.boundarycondition &#8212; SpatialPy 1.2.2 documentation</title>
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
<link rel="stylesheet" type="text/css" href="../../../_static/css/spatialpy_alabaster_customizations.css" />
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<h1>Source code for spatialpy.core.boundarycondition</h1><div class="highlight"><pre>
<span></span><span class="c1"># SpatialPy is a Python 3 package for simulation of</span>
<span class="c1"># spatial deterministic/stochastic reaction-diffusion-advection problems</span>
<span class="c1"># Copyright (C) 2019 - 2022 SpatialPy developers.</span>
<span class="c1"># Copyright (C) 2019 - 2023 SpatialPy developers.</span>

<span class="c1"># This program is free software: you can redistribute it and/or modify</span>
<span class="c1"># it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 as</span>
Expand Down Expand Up @@ -276,7 +276,7 @@ <h1>Source code for spatialpy.core.boundarycondition</h1><div class="highlight">
<div class="clearer"></div>
</div>
<div class="footer">
&copy;Copyright (C) 2019-2022.
&copy;Copyright (C) 2019-2023.

|
Powered by <a href="http://sphinx-doc.org/">Sphinx 5.3.0</a>
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6 changes: 3 additions & 3 deletions docs/build/html/_modules/spatialpy/core/cleanup.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>spatialpy.core.cleanup &#8212; SpatialPy 1.2.1 documentation</title>
<title>spatialpy.core.cleanup &#8212; SpatialPy 1.2.2 documentation</title>
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
<link rel="stylesheet" type="text/css" href="../../../_static/css/spatialpy_alabaster_customizations.css" />
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<h1>Source code for spatialpy.core.cleanup</h1><div class="highlight"><pre>
<span></span><span class="c1"># SpatialPy is a Python 3 package for simulation of</span>
<span class="c1"># spatial deterministic/stochastic reaction-diffusion-advection problems</span>
<span class="c1"># Copyright (C) 2019 - 2022 SpatialPy developers.</span>
<span class="c1"># Copyright (C) 2019 - 2023 SpatialPy developers.</span>

<span class="c1"># This program is free software: you can redistribute it and/or modify</span>
<span class="c1"># it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 as</span>
Expand Down Expand Up @@ -196,7 +196,7 @@ <h1>Source code for spatialpy.core.cleanup</h1><div class="highlight"><pre>
<div class="clearer"></div>
</div>
<div class="footer">
&copy;Copyright (C) 2019-2022.
&copy;Copyright (C) 2019-2023.

|
Powered by <a href="http://sphinx-doc.org/">Sphinx 5.3.0</a>
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6 changes: 3 additions & 3 deletions docs/build/html/_modules/spatialpy/core/datafunction.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>spatialpy.core.datafunction &#8212; SpatialPy 1.2.1 documentation</title>
<title>spatialpy.core.datafunction &#8212; SpatialPy 1.2.2 documentation</title>
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
<link rel="stylesheet" type="text/css" href="../../../_static/css/spatialpy_alabaster_customizations.css" />
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<h1>Source code for spatialpy.core.datafunction</h1><div class="highlight"><pre>
<span></span><span class="c1"># SpatialPy is a Python 3 package for simulation of</span>
<span class="c1"># spatial deterministic/stochastic reaction-diffusion-advection problems</span>
<span class="c1"># Copyright (C) 2019 - 2022 SpatialPy developers.</span>
<span class="c1"># Copyright (C) 2019 - 2023 SpatialPy developers.</span>

<span class="c1"># This program is free software: you can redistribute it and/or modify</span>
<span class="c1"># it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 as</span>
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<div class="clearer"></div>
</div>
<div class="footer">
&copy;Copyright (C) 2019-2022.
&copy;Copyright (C) 2019-2023.

|
Powered by <a href="http://sphinx-doc.org/">Sphinx 5.3.0</a>
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>spatialpy.core.domain &#8212; SpatialPy 1.2.1 documentation</title>
<title>spatialpy.core.domain &#8212; SpatialPy 1.2.2 documentation</title>
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
<link rel="stylesheet" type="text/css" href="../../../_static/css/spatialpy_alabaster_customizations.css" />
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<h1>Source code for spatialpy.core.domain</h1><div class="highlight"><pre>
<span></span><span class="c1"># SpatialPy is a Python 3 package for simulation of</span>
<span class="c1"># spatial deterministic/stochastic reaction-diffusion-advection problems</span>
<span class="c1"># Copyright (C) 2019 - 2022 SpatialPy developers.</span>
<span class="c1"># Copyright (C) 2019 - 2023 SpatialPy developers.</span>

<span class="c1"># This program is free software: you can redistribute it and/or modify</span>
<span class="c1"># it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 as</span>
Expand Down Expand Up @@ -1384,7 +1384,7 @@ <h1>Source code for spatialpy.core.domain</h1><div class="highlight"><pre>
<div class="clearer"></div>
</div>
<div class="footer">
&copy;Copyright (C) 2019-2022.
&copy;Copyright (C) 2019-2023.

|
Powered by <a href="http://sphinx-doc.org/">Sphinx 5.3.0</a>
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>spatialpy.core.geometry &#8212; SpatialPy 1.2.1 documentation</title>
<title>spatialpy.core.geometry &#8212; SpatialPy 1.2.2 documentation</title>
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
<link rel="stylesheet" type="text/css" href="../../../_static/css/spatialpy_alabaster_customizations.css" />
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<h1>Source code for spatialpy.core.geometry</h1><div class="highlight"><pre>
<span></span><span class="c1"># SpatialPy is a Python 3 package for simulation of</span>
<span class="c1"># spatial deterministic/stochastic reaction-diffusion-advection problems</span>
<span class="c1"># Copyright (C) 2019 - 2022 SpatialPy developers.</span>
<span class="c1"># Copyright (C) 2019 - 2023 SpatialPy developers.</span>

<span class="c1"># This program is free software: you can redistribute it and/or modify</span>
<span class="c1"># it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 as</span>
Expand Down Expand Up @@ -257,7 +257,7 @@ <h1>Source code for spatialpy.core.geometry</h1><div class="highlight"><pre>
<div class="clearer"></div>
</div>
<div class="footer">
&copy;Copyright (C) 2019-2022.
&copy;Copyright (C) 2019-2023.

|
Powered by <a href="http://sphinx-doc.org/">Sphinx 5.3.0</a>
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6 changes: 3 additions & 3 deletions docs/build/html/_modules/spatialpy/core/initialcondition.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>spatialpy.core.initialcondition &#8212; SpatialPy 1.2.1 documentation</title>
<title>spatialpy.core.initialcondition &#8212; SpatialPy 1.2.2 documentation</title>
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
<link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
<link rel="stylesheet" type="text/css" href="../../../_static/css/spatialpy_alabaster_customizations.css" />
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<h1>Source code for spatialpy.core.initialcondition</h1><div class="highlight"><pre>
<span></span><span class="c1"># SpatialPy is a Python 3 package for simulation of</span>
<span class="c1"># spatial deterministic/stochastic reaction-diffusion-advection problems</span>
<span class="c1"># Copyright (C) 2019 - 2022 SpatialPy developers.</span>
<span class="c1"># Copyright (C) 2019 - 2023 SpatialPy developers.</span>

<span class="c1"># This program is free software: you can redistribute it and/or modify</span>
<span class="c1"># it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 as</span>
Expand Down Expand Up @@ -306,7 +306,7 @@ <h1>Source code for spatialpy.core.initialcondition</h1><div class="highlight"><
<div class="clearer"></div>
</div>
<div class="footer">
&copy;Copyright (C) 2019-2022.
&copy;Copyright (C) 2019-2023.

|
Powered by <a href="http://sphinx-doc.org/">Sphinx 5.3.0</a>
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