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fix codec initialization for zarr3
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tasansal committed Sep 4, 2025
commit d7365072f06f0fbff33188ac4bcf12bc5763ef7a
6 changes: 3 additions & 3 deletions src/mdio/api/convenience.py
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
from typing import TYPE_CHECKING

import zarr
from numcodecs import Blosc
from numcodecs.zarr3 import Blosc
from tqdm.auto import tqdm

from mdio import MDIOReader
Expand Down Expand Up @@ -134,8 +134,8 @@ def create_rechunk_plan(
metadata_arrs = []
data_arrs = []

header_compressor = Blosc("zstd")
trace_compressor = Blosc("zstd") if compressors is None else compressors
header_compressor = Blosc(cname="zstd")
trace_compressor = Blosc(cname="zstd") if compressors is None else compressors

for chunks, suffix in zip(chunks_list, suffix_list, strict=True):
norm_chunks = tuple(min(chunk, size) for chunk, size in zip(chunks, source.shape, strict=True))
Expand Down
4 changes: 2 additions & 2 deletions src/mdio/core/factory.py
Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@
from typing import Any

import zarr
from numcodecs import Blosc
from numcodecs.zarr3 import Blosc
from numpy.typing import DTypeLike
from zarr import Group
from zarr import open_group
Expand Down Expand Up @@ -160,7 +160,7 @@ def create_empty(
name=f"{variable.name}_trace_headers",
shape=config.grid.shape[:-1], # Same spatial shape as data
chunks=variable.chunks[:-1], # Same spatial chunks as data
compressors=Blosc("zstd"),
compressors=Blosc(cname="zstd"),
dtype=header_dtype,
)

Expand Down
4 changes: 2 additions & 2 deletions src/mdio/schemas/v1/dataset_serializer.py
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@

import numpy as np
from dask import array as dask_array
from numcodecs import Blosc as nc_Blosc
from numcodecs.zarr3 import Blosc as nc_Blosc
from xarray import DataArray as xr_DataArray
from xarray import Dataset as xr_Dataset

Expand Down Expand Up @@ -127,7 +127,7 @@ def _convert_compressor(

if isinstance(compressor, mdio_Blosc):
return nc_Blosc(
cname=compressor.algorithm.value,
cname=compressor.algorithm,
clevel=compressor.level,
shuffle=compressor.shuffle.value,
blocksize=compressor.blocksize if compressor.blocksize > 0 else 0,
Expand Down
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