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seqneut-pipeline Public
Forked from jbloomlab/seqneut-pipelinePipeline for analyzing sequencing-based neutralization assays
Jupyter Notebook MIT License UpdatedOct 27, 2025 -
bench-to-byte Public
Forked from jbloomlab/bench-to-byteA biologist's guide to crafting quality code
JavaScript UpdatedNov 5, 2024 -
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reedmuenchcalculator Public
Forked from jbloomlab/reedmuenchcalculatorA python script for computing TCID50 using the Reed-Muench formula
Python UpdatedJun 3, 2024 -
resume Public
Generate LaTeX and Markdown resume from YAML with Python.
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titercalculator Public
Compute titers from endpoint dilution assays
Svelte MIT License UpdatedJan 23, 2024 -
dms-vep-pipeline Public
Forked from dms-vep/dms-vep-pipelinePipeline for analyzing deep mutational scanning (DMS) of viral entry proteins (VEPs)
Jupyter Notebook Other UpdatedSep 28, 2023 -
hammond Public
Forked from akhilrex/hammondSelf hosted vehicle and expense management system. Like Clarkson, but better
Go GNU Affero General Public License v3.0 UpdatedJan 30, 2023 -
alignparse Public
Forked from jbloomlab/alignparseAlign sequences and then parse features.
Jupyter Notebook Other UpdatedSep 7, 2022 -
ggplot2 Public
Forked from tidyverse/ggplot2An implementation of the Grammar of Graphics in R
R Other UpdatedMar 29, 2022 -
seurat-disk Public
Forked from mojaveazure/seurat-diskInterfaces for HDF5-based Single Cell File Formats
R GNU General Public License v3.0 UpdatedJun 21, 2021 -
BiocGenerics Public
Forked from Bioconductor/BiocGenericsS4 generic functions used in Bioconductor
R UpdatedSep 10, 2020 -
velocyto.R Public
Forked from velocyto-team/velocyto.RRNA velocity estimation in R
R UpdatedAug 2, 2019 -
sctransform Public
Forked from satijalab/sctransformR package for modeling single cell UMI expression data using regularized negative binomial regression
R GNU General Public License v3.0 UpdatedJul 24, 2019 -
phd-thesis-template Public
Forked from kks32/phd-thesis-templateA LaTeX / XeLaTeX / LuaLaTeX PhD thesis template for Cambridge University Engineering Department (CUED)
TeX MIT License UpdatedMay 15, 2019 -
academic-kickstart Public
Forked from HugoBlox/hugo-theme-academic-cvEasily create a beautiful website using Academic and Hugo
Shell MIT License UpdatedNov 16, 2018 -
kableExtra Public
Forked from haozhu233/kableExtraConstruct Complex Table with knitr::kable() + pipe
R Other UpdatedSep 19, 2018 -
seurat Public
Forked from satijalab/seuratR toolkit for single cell genomics
R GNU General Public License v3.0 UpdatedAug 20, 2018 -
hyde-lab-notebook Public
Forked from spf13/hydeLab notebook template based on hyde
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easy-data Public
Forked from czi-hca-comp-tools/easy-dataeasy access to benchmark datasets
MIT License UpdatedApr 26, 2018 -
hca-jamboree-how-many-cells Public
Forked from HumanCellAtlas/hca-jamboree-how-many-cellsHTML MIT License UpdatedApr 11, 2018 -
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