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[SPARK-1103] [WIP] Automatic garbage collection of RDD, shuffle and broadcast data #126
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As of this commit, Spark does not clean up broadcast blocks. This will be done in the next commit.
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| Original file line number | Diff line number | Diff line change |
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@@ -21,105 +21,106 @@ import java.lang.ref.{ReferenceQueue, WeakReference} | |
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| import scala.collection.mutable.{ArrayBuffer, SynchronizedBuffer} | ||
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| import org.apache.spark.broadcast.Broadcast | ||
| import org.apache.spark.rdd.RDD | ||
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| /** Listener class used for testing when any item has been cleaned by the Cleaner class */ | ||
| private[spark] trait CleanerListener { | ||
| def rddCleaned(rddId: Int) | ||
| def shuffleCleaned(shuffleId: Int) | ||
| } | ||
| /** | ||
| * Classes that represent cleaning tasks. | ||
| */ | ||
| private sealed trait CleanupTask | ||
| private case class CleanRDD(rddId: Int) extends CleanupTask | ||
| private case class CleanShuffle(shuffleId: Int) extends CleanupTask | ||
| private case class CleanBroadcast(broadcastId: Long) extends CleanupTask | ||
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| /** | ||
| * Cleans RDDs and shuffle data. | ||
| * A WeakReference associated with a CleanupTask. | ||
| * | ||
| * When the referent object becomes only weakly reachable, the corresponding | ||
| * CleanupTaskWeakReference is automatically added to the given reference queue. | ||
| */ | ||
| private class CleanupTaskWeakReference( | ||
| val task: CleanupTask, | ||
| referent: AnyRef, | ||
| referenceQueue: ReferenceQueue[AnyRef]) | ||
| extends WeakReference(referent, referenceQueue) | ||
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| /** | ||
| * An asynchronous cleaner for RDD, shuffle, and broadcast state. | ||
| * | ||
| * This maintains a weak reference for each RDD, ShuffleDependency, and Broadcast of interest, | ||
| * to be processed when the associated object goes out of scope of the application. Actual | ||
| * cleanup is performed in a separate daemon thread. | ||
| */ | ||
| private[spark] class ContextCleaner(sc: SparkContext) extends Logging { | ||
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| /** Classes to represent cleaning tasks */ | ||
| private sealed trait CleanupTask | ||
| private case class CleanRDD(rddId: Int) extends CleanupTask | ||
| private case class CleanShuffle(shuffleId: Int) extends CleanupTask | ||
| // TODO: add CleanBroadcast | ||
| private val referenceBuffer = new ArrayBuffer[CleanupTaskWeakReference] | ||
| with SynchronizedBuffer[CleanupTaskWeakReference] | ||
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| private val referenceBuffer = new ArrayBuffer[WeakReferenceWithCleanupTask] | ||
| with SynchronizedBuffer[WeakReferenceWithCleanupTask] | ||
| private val referenceQueue = new ReferenceQueue[AnyRef] | ||
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| private val listeners = new ArrayBuffer[CleanerListener] | ||
| with SynchronizedBuffer[CleanerListener] | ||
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| private val cleaningThread = new Thread() { override def run() { keepCleaning() }} | ||
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| private val REF_QUEUE_POLL_TIMEOUT = 100 | ||
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| @volatile private var stopped = false | ||
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| private class WeakReferenceWithCleanupTask(referent: AnyRef, val task: CleanupTask) | ||
| extends WeakReference(referent, referenceQueue) | ||
| /** Attach a listener object to get information of when objects are cleaned. */ | ||
| def attachListener(listener: CleanerListener) { | ||
| listeners += listener | ||
| } | ||
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| /** Start the cleaner */ | ||
| /** Start the cleaner. */ | ||
| def start() { | ||
| cleaningThread.setDaemon(true) | ||
| cleaningThread.setName("ContextCleaner") | ||
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Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. I'd say "Spark ContextCleaner" here since Spark programs have tons of threads from different libraries (akka, jetty, etc). |
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| cleaningThread.start() | ||
| } | ||
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| /** Stop the cleaner */ | ||
| /** Stop the cleaner. */ | ||
| def stop() { | ||
| stopped = true | ||
| cleaningThread.interrupt() | ||
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Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Isn't there a risk that calling
Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Ya it looks like a lot of the clean-up implementations interact with shared state like the
Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Are you suggesting that we just let the thread terminate automatically with the JVM?
Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. No I'm suggesting that you rely on the existing |
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| } | ||
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| /** | ||
| * Register a RDD for cleanup when it is garbage collected. | ||
| */ | ||
| /** Register a RDD for cleanup when it is garbage collected. */ | ||
| def registerRDDForCleanup(rdd: RDD[_]) { | ||
| registerForCleanup(rdd, CleanRDD(rdd.id)) | ||
| } | ||
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| /** | ||
| * Register a shuffle dependency for cleanup when it is garbage collected. | ||
| */ | ||
| /** Register a ShuffleDependency for cleanup when it is garbage collected. */ | ||
| def registerShuffleForCleanup(shuffleDependency: ShuffleDependency[_, _]) { | ||
| registerForCleanup(shuffleDependency, CleanShuffle(shuffleDependency.shuffleId)) | ||
| } | ||
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| /** Cleanup RDD. */ | ||
| def cleanupRDD(rdd: RDD[_]) { | ||
| doCleanupRDD(rdd.id) | ||
| } | ||
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| /** Cleanup shuffle. */ | ||
| def cleanupShuffle(shuffleDependency: ShuffleDependency[_, _]) { | ||
| doCleanupShuffle(shuffleDependency.shuffleId) | ||
| } | ||
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| /** Attach a listener object to get information of when objects are cleaned. */ | ||
| def attachListener(listener: CleanerListener) { | ||
| listeners += listener | ||
| /** Register a Broadcast for cleanup when it is garbage collected. */ | ||
| def registerBroadcastForCleanup[T](broadcast: Broadcast[T]) { | ||
| registerForCleanup(broadcast, CleanBroadcast(broadcast.id)) | ||
| } | ||
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Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Once you rebase against master, sc.unpersist pretty much does exactly the same thing. (You might have to change the argument from an RDD to an Int though). |
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| /** Register an object for cleanup. */ | ||
| private def registerForCleanup(objectForCleanup: AnyRef, task: CleanupTask) { | ||
| referenceBuffer += new WeakReferenceWithCleanupTask(objectForCleanup, task) | ||
| referenceBuffer += new CleanupTaskWeakReference(task, objectForCleanup, referenceQueue) | ||
| } | ||
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| /** Keep cleaning RDDs and shuffle data */ | ||
| /** Keep cleaning RDD, shuffle, and broadcast state. */ | ||
| private def keepCleaning() { | ||
| while (!isStopped) { | ||
| while (!stopped) { | ||
| try { | ||
| val reference = Option(referenceQueue.remove(REF_QUEUE_POLL_TIMEOUT)) | ||
| .map(_.asInstanceOf[WeakReferenceWithCleanupTask]) | ||
| val reference = Option(referenceQueue.remove(ContextCleaner.REF_QUEUE_POLL_TIMEOUT)) | ||
| .map(_.asInstanceOf[CleanupTaskWeakReference]) | ||
| reference.map(_.task).foreach { task => | ||
| logDebug("Got cleaning task " + task) | ||
| referenceBuffer -= reference.get | ||
| task match { | ||
| case CleanRDD(rddId) => doCleanupRDD(rddId) | ||
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Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. From what I can tell here Otherwise if there is, e.g. GC on one of the slaves, or one of the shuffles takes a long time to delete all of the files, then you could end up in a situation where you are sitting in this loop for a long time. That doesn't seem super desirable.
Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Ah I see - actually maybe the other ones are non blocking as well. It would be good to say in, e.g. the |
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| case CleanShuffle(shuffleId) => doCleanupShuffle(shuffleId) | ||
| case CleanBroadcast(broadcastId) => doCleanupBroadcast(broadcastId) | ||
| } | ||
| } | ||
| } catch { | ||
| case ie: InterruptedException => | ||
| if (!isStopped) logWarning("Cleaning thread interrupted") | ||
| if (!stopped) logWarning("Cleaning thread interrupted") | ||
| case t: Throwable => logError("Error in cleaning thread", t) | ||
| } | ||
| } | ||
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@@ -129,7 +130,7 @@ private[spark] class ContextCleaner(sc: SparkContext) extends Logging { | |
| private def doCleanupRDD(rddId: Int) { | ||
| try { | ||
| logDebug("Cleaning RDD " + rddId) | ||
| sc.unpersistRDD(rddId, false) | ||
| sc.unpersistRDD(rddId, blocking = false) | ||
| listeners.foreach(_.rddCleaned(rddId)) | ||
| logInfo("Cleaned RDD " + rddId) | ||
| } catch { | ||
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@@ -150,10 +151,47 @@ private[spark] class ContextCleaner(sc: SparkContext) extends Logging { | |
| } | ||
| } | ||
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| private def mapOutputTrackerMaster = | ||
| sc.env.mapOutputTracker.asInstanceOf[MapOutputTrackerMaster] | ||
| /** Perform broadcast cleanup. */ | ||
| private def doCleanupBroadcast(broadcastId: Long) { | ||
| try { | ||
| logDebug("Cleaning broadcast " + broadcastId) | ||
| broadcastManager.unbroadcast(broadcastId, removeFromDriver = true) | ||
| listeners.foreach(_.broadcastCleaned(broadcastId)) | ||
| logInfo("Cleaned broadcast " + broadcastId) | ||
| } catch { | ||
| case t: Throwable => logError("Error cleaning broadcast " + broadcastId, t) | ||
| } | ||
| } | ||
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| private def blockManagerMaster = sc.env.blockManager.master | ||
| private def broadcastManager = sc.env.broadcastManager | ||
| private def mapOutputTrackerMaster = sc.env.mapOutputTracker.asInstanceOf[MapOutputTrackerMaster] | ||
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| // Used for testing | ||
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| private[spark] def cleanupRDD(rdd: RDD[_]) { | ||
| doCleanupRDD(rdd.id) | ||
| } | ||
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| private[spark] def cleanupShuffle(shuffleDependency: ShuffleDependency[_, _]) { | ||
| doCleanupShuffle(shuffleDependency.shuffleId) | ||
| } | ||
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| private def isStopped = stopped | ||
| private[spark] def cleanupBroadcast[T](broadcast: Broadcast[T]) { | ||
| doCleanupBroadcast(broadcast.id) | ||
| } | ||
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| } | ||
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| private object ContextCleaner { | ||
| private val REF_QUEUE_POLL_TIMEOUT = 100 | ||
| } | ||
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| /** | ||
| * Listener class used for testing when any item has been cleaned by the Cleaner class. | ||
| */ | ||
| private[spark] trait CleanerListener { | ||
| def rddCleaned(rddId: Int) | ||
| def shuffleCleaned(shuffleId: Int) | ||
| def broadcastCleaned(broadcastId: Long) | ||
| } | ||
| Original file line number | Diff line number | Diff line change |
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@@ -642,7 +642,11 @@ class SparkContext( | |
| * [[org.apache.spark.broadcast.Broadcast]] object for reading it in distributed functions. | ||
| * The variable will be sent to each cluster only once. | ||
| */ | ||
| def broadcast[T](value: T) = env.broadcastManager.newBroadcast[T](value, isLocal) | ||
| def broadcast[T](value: T) = { | ||
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Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. It looks like the public return type was dropped, maybe add it back?
Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. oops |
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| val bc = env.broadcastManager.newBroadcast[T](value, isLocal) | ||
| cleaner.registerBroadcastForCleanup(bc) | ||
| bc | ||
| } | ||
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| /** | ||
| * Add a file to be downloaded with this Spark job on every node. | ||
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would be good to set the name of the thread, so that stack dumps are easier to understand.
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Yes, I am working on an updated patch based on all the feedback and I have already put that in.