A public MuSpAn page for community discussions and issue reporting.

Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

Manuscript repo for the project of novel spatially-aware quality control methods

Code used to benchmark Xenium

Solve mysteries through SQL.

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

A novel machine learning pipeline to analyse spatial transcriptomics data

A Deep LSTM-CNN-HMM Neural Network system for Speaker Identification

add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.

WintrCat's Game Report ♟️

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

Sequential regulatory activity predictions with deep convolutional neural networks.

A Python toolkit for subcellular analysis of spatial transcriptomics data

Spatial transcriptome analysis in python

A hyperparameter optimization framework

Multimodal Unsupervised Image-to-Image Translation

Python library for plotting Cellphonedb results. Ported from ktplots R package.

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

🔰 A place to showcase the usage of spotipy

UniCell Deconvolve Paper

UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data

A light weight Python library for the Spotify Web API

David Attenborough narrates your life

Bayesian Segmentation of Spatial Transcriptomics Data