Test Script update, login and some other details#646
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## dev #646 +/- ##
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Coverage 74.61% 74.61%
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Files 306 306
Lines 11345 11345
Branches 2350 2350
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Hits 8465 8465
Misses 2484 2484
Partials 396 396 Continue to review full report at Codecov.
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NickPhura
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Nov 19, 2021
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Looks good
You mentioned the keycloak script was generated from something? Might be good to include a comment or something in the readme that points to how it was made, etc.
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Yes, good point. I'll add a reference in the readme |
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NickPhura
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May 5, 2022
* Update README.md * First commit (#566) * First commit * Upload * Update the sec produre for unseceruing an attachment * Version update * Update for single upload button * New fixtures * Update * Survey script * delete survey * Spacing * Update access request page: remove regional offices section, remove non-supported roles from dropdown (#610) * [BHBC-1449] Add Help Link (#614) * Update template validation schemas (#612) * Add migration to update moose SRB/Composition Validation schema * Add Summary Statistics file to resources page * Add Date column to recruitment survey * Fix dependency warnings * Remove unused test function * Update deployStatic.yml * BHBC-1363 (#599) Support project/survey report attachments with meta * Add admin only endpoint to update the api log level at runtime (#619) * Add admin only endpoint to update the api log level at runtime * Update test * Adding Test scripts (#617) * Adding Test scripts * Create project and Survey * Remove second test file * Test Updates/Fixes (#620) Test updates/Fixes * BHBC-1363-2: Fix signed url for reports, update fileupload to support single file only settings. (#621) * BHBC-1461 (#622) * Readme makefile updates (#623) * Update Makefile, Readme, env * Rename BioHub -> SIMS * Add `Order By` clause to species sql (#627) * BHBC-1462: Add new record to proprietary_type lookup table. (#629) - Update code to leverage the `is_first_nation` column from the proprietary_type table. - Previously the code was using the row id * BHBC-1470: View/edit survey and project metadata (#624) BHBC-1470: View/edit survey and project metadata (#624) * BHBC-1478: Update API to check project level permissions. (#630) * Combine dependabot (#634) * Bump tmpl from 1.0.4 to 1.0.5 in /app Bumps [tmpl](https://github.com/daaku/nodejs-tmpl) from 1.0.4 to 1.0.5. - [Release notes](https://github.com/daaku/nodejs-tmpl/releases) - [Commits](https://github.com/daaku/nodejs-tmpl/commits/v1.0.5) --- updated-dependencies: - dependency-name: tmpl dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> * Bump ws from 5.2.2 to 5.2.3 in /app Bumps [ws](https://github.com/websockets/ws) from 5.2.2 to 5.2.3. - [Release notes](https://github.com/websockets/ws/releases) - [Commits](websockets/ws@5.2.2...5.2.3) --- updated-dependencies: - dependency-name: ws dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> * Bump validator from 13.6.0 to 13.7.0 in /n8n Bumps [validator](https://github.com/validatorjs/validator.js) from 13.6.0 to 13.7.0. - [Release notes](https://github.com/validatorjs/validator.js/releases) - [Changelog](https://github.com/validatorjs/validator.js/blob/master/CHANGELOG.md) - [Commits](validatorjs/validator.js@13.6.0...13.7.0) --- updated-dependencies: - dependency-name: validator dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> * Update Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * migration (#637) * Bhbc 1470 (#638) * Small test script and seeding changes (#631) * Small test script and seeding changes * Remove Shreyas from the seed Co-authored-by: Nick Phura <Nick.Phura@quartech.com> * Create zap.yml * Update zap.yml * Create dev.context * Update zap.yml * Zap follow up (#640) * Small test script and seeding changes * Remove Shreyas from the seed * Details for ZAP * Subtitute hardcoded PW with GHA- Secret * [BHBC-1470] Increase Report Summary Input Size (#641) * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * BHBC-1467: One page project/survey layout (#636) One page project/survey layout * Test Script update, login and some other details (#646) * Test Script update, login and some other details * Add delay to login * Remove file * Pointing to the right authurl * Path confusion * And again * It is all in the timing * Update readme as per Nick's comment * BHBC-950 (#643) - System admin users can delete other system users. * Update DialogContext.Snackbar(#647) Update snackbar to accept ReactNode as message * Update deployStatic.yml * [BHBC-950] UI Cleanup (#648) * [BHBC-950] UI Cleanup * [BHBC-950] Updating UI * Trigger Build * Update to test script to deal with changed id for report upload * [BHBC-950] Fixing Request Access Table Co-authored-by: Roland Stens <roland.stens@gmail.com> Co-authored-by: Anissa Agahchen <anissa.agahchen@akimilabs.com> * Update deployStatic.yml * BHBC-949: Manage Project Team - Add + Delete User (#645) - Add project users page - Add project users "add project participant" form - Add delete project user functionality - Update some api project role authorization checks - Update some frontend role check functionality - misc fixes/updates * Update deployStatic.yml * First test (#650) * First test * Update path * - update older node versions to 14 - Increase tsconfig versions - Increase a few package.json versions - Update a few git actions to latest versions * Revert accidental backup file change * Set back to es2015 otherwise the test framework will fail Co-authored-by: Nick Phura <nickphura@gmail.com> * Update deployStatic.yml * Manage system/project roles (#649) * BHBC-948: Allow users to change existing system user roles. * BHBC-1491: Allow users to change existing project participant's roles. * Update deployStatic.yml * [BHBC-948] UI Updates / Cleanup (#652) * Updates to Agancies and Proeject Coordinator name/label * Revert "Merge branch 'dev' of https://github.com/bcgov/biohubbc into dev" This reverts commit 16b5f48, reversing changes made to 1c88d34. * Changes to codes.ts for removing BC and all over for the coordinator vs contact name … (#654) * Cahnges to codes.ts and all over for the coordinator ro contact name change * Update snapshots * Finish BHBC-1505 * Update deployStatic.yml * BHBC-1457 (#651) Implemented EML endpoint and addition to target DwC archive file on S3. Moved all EML creation functionality to middle tier tooling. * Tech debt (#653) * Split up the workflow for uploading project/survey attachments and project/survey reports * associated tests * Updates to the test script and table changes (#658) * All changes * Update to formatting * Remove new table * Bhbc 1499 (#656) Updates to the Moose template and transformation configs * BHBC-1527: system and project roles updated (#659) * update url for download (#660) * Fix wonky survey view/view-for-update queries + misc (#664) * Fix survey view/view-for-update queries + misc * BHBC-1496: Transform Lat/Long to Darwin Core Accepted Format (#667) - Enhance transformations to allow multiple source columns in parse step (uses first non-null value) - Update scrape SQL to account for UTM or LatLong verbatimCoordinates - Add `parseLatLongString` spatial-util function to parse a lat long string. * BHBC-1525 (#669) * BHBC-1525 - initial EML test file and low hanging target testing * remove unused system accounts (#666) * remove unused system accounts * update code to reference previously updated role names * Security rules for PorH (#668) * Security rules for PorH * Endpoint Tests (#661) * Add missing `connection.commit`'s (#671) * Update endpoint role authorization (#670) * Update endpoint role authorization * Update occurrence scrape verbatimCoordinates handling * Bhbc 1400 (#657) Goat template validations and transformations Sheep template validations and transformations * UI Updates / Clean-up (#674) * Update all the BC and DC to tune the resource usage (#678) * BHBC-1523: Add new users (#675) * Added "+ new users" button on Admin user page and added testing for both API and app. * Bhbc 1529- Add custom props to templates (#677) * BHBC-1530: Update Moose transformations to account for all fields. (#680) * BHBC-1530 - Enhance xlsx transformation parse step - Update Moose validation/transformation schemas - Minor refactor to part of transformation code - Update resource page link * BHBC-1520: View user details (#679) - Ability to add system users from the manage users page - Associated endpoints and tests - Page to view user details and their associated projects - Ability to remove user from projects or update their role. - Associated endpoints and tests - Reduce some api code duplication * BHBC-1531 (#683) * BHBC-1531 - adjusted taxonomic codes to exclude those codes that have end date setc * Fix focal species yup schema validation rule * BHBC-1520 (#684) Prevent projects from having no Project Lead role: bug fixes + tests * BHBC-1512: Added zoom for fullscreen map on project details. (#685) Added zoom for fullscreen map on project details * Enhance useInterval hook to support a timeout. Add unit tests. (#686) * BHBC-1512-2: Additional map scroll wheel zoom changes (#687) * BHBC-1512-2: Additional map scroll wheel zoom changes * BHBC-1545: Tech Debt: Re-export all queries via queries.ts. Update custom error naming. (#688) Add index files for all query folders Add queries.ts to re-export all queries. Update all references to existing queries to instead reference queries.ts Rename `CustomError.ts->CustomError` to `custom-error.ts->HTTPError` and all references. Run formatter/linter. * BHBC-1545: Tech Debt: Updated apidoc for /user/* (#681) Update openapi doc for /user/* endpoints Misc unit test updates * BHBC-1503: GCNotfiy (#689) * Created GCNotify Api endpoint for generic email functionality * BHBC-1557: Tech Debt 3 (#690) * Add user-service.ts Move user functions to user-service.ts. Update tests. Add code-service.ts Move code functions to code-service.ts Update tests. Misc root-api-doc.ts cleanup Add swagger-ui container to docker-compose * Add SwaggerUI to docker-compose.yml (for local dev currently) * Minor makefile updates * Updates to error classes * Updates to error logging * Minor test tweak * Handle DatabaseErrors * remove console logs * BHBC-1492: Email Access Request (#692) * BHBC-1557: Tech Debt - Update App route handling and route security. (#693) * Tech debt: Fix partnerships, and update /project/{projectId}/update endpoint (#694) * BHBC-1557: Ke-tech-debt (#698) * updated openApi schemas * Added Survey creation. (#700) * Unify dependabot (#701) * Bump nanoid from 3.1.30 to 3.2.0 in /n8n (#704) * Bump copy-props from 2.0.4 to 2.0.5 in /api (#702) * Bump node-fetch from 2.6.5 to 2.6.7 in /n8n (#705) * BHBC-1557: Add ProjectService. (#699) * Bump lodash from 4.17.20 to 4.17.21 in /app (#703) Bumps [lodash](https://github.com/lodash/lodash) from 4.17.20 to 4.17.21. - [Release notes](https://github.com/lodash/lodash/releases) - [Commits](lodash/lodash@4.17.20...4.17.21) --- updated-dependencies: - dependency-name: lodash dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <anissa.agahchen@akimilabs.com> * BHBC-1493: Approval Email For Access Request (#708) Approval email sent to idir email connected to access request user. * Dev ops scale schemaspy up and down (#709) * Scale SchemaSpy as part of the pipeline to make sure it is current all the time * Make it a one step SchemaSpy cycle * Formatting * Fix typo * Reduce cpu/request limits * Revert "Reduce cpu/request limits" This reverts commit b99f8cb. * Reduce cpu/request limits + Adjust default Log Level (#716) * BCEID bug fix + improvements (#717) * BHBC-1613 - support bceid login (#720) * BHBC-1580: Updates to moose/sheep/goat templates (#725) * Tech debt 6 (#707) * Disable html logging when running app tests. * Update logger utils, make mocha disable winston logger before test execution * Add missing type definition for @tmcw/togeojson * Updates to map components (from resto) * Update typescript and knex versions, remove swagger ui docker compose step, add swagger-ui directly to app * Incorporate dependabot changes * Update eslint config * Run lint-fix using updated eslint rules and fix issues * Update startend date component * Move old `/users` endpoint to `/user/list` * First cut of the postman collection with automatic login (#726) * Isolating Service Code (#724) Port changes from restoration to move functionality to services * Update siteminder url (#736) * Survey- Additional Fields (#731) * create/view/edit survey page with new purpose and methodology form * addition of "ecological season", "intended outcome" and "vantage" lookup tables & removal of common survey methodology - field table name change to "field method" * "survey.objectives" attribute name change to "survey.additional_details" * seeding new lookup tables * re-seed "field method" table * tests * package lock updates for minimist (#740) * dependabot change version for moment (#739) * Bump convict from 6.2.0 to 6.2.2 in /n8n (#745) Bumps [convict](https://github.com/mozilla/node-convict) from 6.2.0 to 6.2.2. - [Release notes](https://github.com/mozilla/node-convict/releases) - [Changelog](https://github.com/mozilla/node-convict/blob/master/CHANGELOG.md) - [Commits](mozilla/node-convict@v6.2.0...v6.2.2) --- updated-dependencies: - dependency-name: convict dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump async from 2.6.3 to 2.6.4 in /app (#743) Bumps [async](https://github.com/caolan/async) from 2.6.3 to 2.6.4. - [Release notes](https://github.com/caolan/async/releases) - [Changelog](https://github.com/caolan/async/blob/v2.6.4/CHANGELOG.md) - [Commits](caolan/async@v2.6.3...v2.6.4) --- updated-dependencies: - dependency-name: async dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump async from 3.2.0 to 3.2.3 in /testing/e2e (#742) Bumps [async](https://github.com/caolan/async) from 3.2.0 to 3.2.3. - [Release notes](https://github.com/caolan/async/releases) - [Changelog](https://github.com/caolan/async/blob/master/CHANGELOG.md) - [Commits](caolan/async@v3.2.0...v3.2.3) --- updated-dependencies: - dependency-name: async dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * BHBC-1688: Add survey radio field (#746) * BHBC-1688: Add new radio button field to survey. * Add github action to write openshift urls * Techdebt (#741) remove default logs fix tests fix code smells * Misc Cleanup (#748) * misc cleanup * Update user seed file * BHBC-1690: Add scroll to error formik component (#749) * Scroll to survey form errors. * Fix vantage codes bug that returned an array with a null element (#750) * Sims taxonomy (#744) * app is working with the taxonomy service * updated snapshots * tests * survey service set up, using it for survey list * skipping broken tests * Remove `wldtaxonomic_units` table from survey queries * merge conflicts fixed * skipped some tests * add TODO comment * Trigger Build * Fix some tests * fixes attachmentList * fixed tests * Update project page test * surveysList test updated * Update ProjectsListPage.test.tsx * Update ReviewAccessRequestForm.test.tsx * test for Active Users List * fix more tests * code smells * Remove unused imports * fix general information bug * fix warning on general information form Co-authored-by: Nick Phura <nickphura@gmail.com> Co-authored-by: Kjartan <Kjartan.Einarsson@quartech.com> * BHBC-1689: Implement API Response Validation (#737) * Add api response validation * Updates * update reponse for the project attachments list * BHBC-1689: Add validation to projects * BHBC-1689: Add response validation to surveys + attachments + observations * BHBC-1689: Add response validation to project attachments. * BHBC-1689: Fix publish_year type for report attachment uploading via POST. * BHBC-1689: Fix api response validation for user data response. * BHBC-1689: Change year_published type from string to number in attachment tests. * BHBC-1689: Update tests * Update occurrence submission response openapi * BHBC-1689: Fix api response validation for uploads * Update summary submission openapi and parse logic * BHBC-1689: Fix all failing tests for reports * BHBC-1689: Make lint-fix and make format-fix. * BHBC-1689: Remove console logs used for testing. * api validation for view.ts and surveys.ts * BHBC-1689: Fix validation for surveys. * BHBC-1689: Fix additional survey validation errors re publish_date. * BHBC-1689: Fix additional survey validation for purpose_and_methodolgy and proprietary_data. Co-authored-by: Anissa Agahchen <anissa.agahchen@akimilabs.com> Co-authored-by: Curtis Upshall <curtisupshall@gmail.com> * Add prettier organize imports plugin (#747) * Add prettier organize imports plugin * Run formatter * move permit endpoint functions to service (#751) * move permit endpoint functions to service * trigger openshift deploy * fix code smell * code smell v2 * Adjust elastic search query config to handle query terms with spaces (#752) * Adjust elastic search query config to handle query terms with spaces * Remove whole word search as it doesnt work, using this style anyways. * BHBC-1720: Added required fields indicators (#756) * BHBC-1720: Added asterisk to Project Boundary heading. * BHBC-1720: Add required indicator for surveyed_all_areas (not finalized). * BHBC-1720: Changed to 'Surveyed Areas *' * BHBC-1720: Update snapshot tests * Hide MU regions from the display list (#754) * removed MU regions list from the display * update api_delete_survey sql function (#757) * date picker fix (#753) * Bhbc-1725 fix deleting funding agency error (#758) * fix funding_source delete error * Bhbc 1728 (#760) Misc UI Clean-up Fixed the report year issue Fixing version to string * BHBC-1731: Fix open api spec (#762) Fix open api specs for survey-view, survey funding sources update, and project-view * Fix permit dropdown (#759) * remove the ability to select a non-sampling permit (when editing a project) * tweak openapi spec for public project view * More openapi fixes (#764) * public attachments received attachment/reports && secured/unsecured correctly * fixed api calls for retrieve signedUrl and to get unsecured files * Email to outlook (#765) * fixed email redirect in header * make agency_project_id nullable * remove permit from the public page * BHBC-1724: Fix edit dialog control clipping. (#761) Fix edit dialog control clipping * BHBC-1727: Add 'Zoom to Boundary Extent' button to SurveyStudyArea. (#763) * BHBC-1727: Add 'Zoom to Boundary Extent' button to SurveyStudyArea. * BHBC-1727: Automatically zoom to boundary extent upon rendering survey details. * BHBC-1727: make lint-fix; make format-fix; * BHBC-1727: Make Zoom to Boundary Extent button appear on top of the map * BHBC-1727: Fix codesmell. * BHBC-1727: Use absolute 'Zoom to boundary extent' IconButton in survey area map editor dialog. * BHBC-1727: Add 'Zoom to boundary extent' IconButton to Project Location map. * BHBC-1727: lint-fix and format-fit * BHBC-1727: Made PR requested changes. * BHBC-1727: Make lint-fix. * BHBC-1727: Update snapshot tests Co-authored-by: Anissa Agahchen <anissa.agahchen@akimilabs.com> * Fix user seed role id Co-authored-by: Nick Phura <Nick.Phura@quartech.com> Co-authored-by: jeznorth <twenty15creative@gmail.com> Co-authored-by: Anissa Agahchen <anissa.agahchen@akimilabs.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Nick Phura <nickphura@gmail.com> Co-authored-by: Charlie Garrett-Jones <32178098+cgarrettjones@users.noreply.github.com> Co-authored-by: Kjartan <35311998+KjartanE@users.noreply.github.com> Co-authored-by: Shrey Patel <60997794+shreypdev@users.noreply.github.com> Co-authored-by: Kjartan <Kjartan.Einarsson@quartech.com> Co-authored-by: Curtis Upshall <curtisupshall@gmail.com>
NickPhura
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May 10, 2022
* Update README.md * First commit (#566) * First commit * Upload * Update the sec produre for unseceruing an attachment * Version update * Update for single upload button * New fixtures * Update * Survey script * delete survey * Spacing * Moving to test (#611) * Update README.md * First commit (#566) * First commit * Upload * Update the sec produre for unseceruing an attachment * Version update * Update for single upload button * New fixtures * Update * Survey script * delete survey * Spacing * Update access request page: remove regional offices section, remove non-supported roles from dropdown (#610) * [BHBC-1449] Add Help Link (#614) * Update template validation schemas (#612) * Add migration to update moose SRB/Composition Validation schema * Add Summary Statistics file to resources page * Add Date column to recruitment survey * Fix dependency warnings * Remove unused test function * Update deployStatic.yml * Move into test (#615) * Update README.md * First commit (#566) * First commit * Upload * Update the sec produre for unseceruing an attachment * Version update * Update for single upload button * New fixtures * Update * Survey script * delete survey * Spacing * Update access request page: remove regional offices section, remove non-supported roles from dropdown (#610) * [BHBC-1449] Add Help Link (#614) * Update template validation schemas (#612) * Add migration to update moose SRB/Composition Validation schema * Add Summary Statistics file to resources page * Add Date column to recruitment survey * Fix dependency warnings * Remove unused test function * Update deployStatic.yml Co-authored-by: Nick Phura <Nick.Phura@quartech.com> Co-authored-by: jeznorth <twenty15creative@gmail.com> * BHBC-1363 (#599) Support project/survey report attachments with meta * Add admin only endpoint to update the api log level at runtime (#619) * Add admin only endpoint to update the api log level at runtime * Update test * Adding Test scripts (#617) * Adding Test scripts * Create project and Survey * Remove second test file * Test Updates/Fixes (#620) Test updates/Fixes * BHBC-1363-2: Fix signed url for reports, update fileupload to support single file only settings. (#621) * BHBC-1461 (#622) * Readme makefile updates (#623) * Update Makefile, Readme, env * Rename BioHub -> SIMS * Add `Order By` clause to species sql (#627) * BHBC-1462: Add new record to proprietary_type lookup table. (#629) - Update code to leverage the `is_first_nation` column from the proprietary_type table. - Previously the code was using the row id * BHBC-1470: View/edit survey and project metadata (#624) BHBC-1470: View/edit survey and project metadata (#624) * BHBC-1478: Update API to check project level permissions. (#630) * Combine dependabot (#634) * Bump tmpl from 1.0.4 to 1.0.5 in /app Bumps [tmpl](https://github.com/daaku/nodejs-tmpl) from 1.0.4 to 1.0.5. - [Release notes](https://github.com/daaku/nodejs-tmpl/releases) - [Commits](https://github.com/daaku/nodejs-tmpl/commits/v1.0.5) --- updated-dependencies: - dependency-name: tmpl dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> * Bump ws from 5.2.2 to 5.2.3 in /app Bumps [ws](https://github.com/websockets/ws) from 5.2.2 to 5.2.3. - [Release notes](https://github.com/websockets/ws/releases) - [Commits](websockets/ws@5.2.2...5.2.3) --- updated-dependencies: - dependency-name: ws dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> * Bump validator from 13.6.0 to 13.7.0 in /n8n Bumps [validator](https://github.com/validatorjs/validator.js) from 13.6.0 to 13.7.0. - [Release notes](https://github.com/validatorjs/validator.js/releases) - [Changelog](https://github.com/validatorjs/validator.js/blob/master/CHANGELOG.md) - [Commits](validatorjs/validator.js@13.6.0...13.7.0) --- updated-dependencies: - dependency-name: validator dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> * Update Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * migration (#637) * Bhbc 1470 (#638) * Small test script and seeding changes (#631) * Small test script and seeding changes * Remove Shreyas from the seed Co-authored-by: Nick Phura <Nick.Phura@quartech.com> * Create zap.yml * Update zap.yml * Create dev.context * Update zap.yml * Zap follow up (#640) * Small test script and seeding changes * Remove Shreyas from the seed * Details for ZAP * Subtitute hardcoded PW with GHA- Secret * [BHBC-1470] Increase Report Summary Input Size (#641) * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * BHBC-1467: One page project/survey layout (#636) One page project/survey layout * Test Script update, login and some other details (#646) * Test Script update, login and some other details * Add delay to login * Remove file * Pointing to the right authurl * Path confusion * And again * It is all in the timing * Update readme as per Nick's comment * BHBC-950 (#643) - System admin users can delete other system users. * Update DialogContext.Snackbar(#647) Update snackbar to accept ReactNode as message * Update deployStatic.yml * [BHBC-950] UI Cleanup (#648) * [BHBC-950] UI Cleanup * [BHBC-950] Updating UI * Trigger Build * Update to test script to deal with changed id for report upload * [BHBC-950] Fixing Request Access Table Co-authored-by: Roland Stens <roland.stens@gmail.com> Co-authored-by: Anissa Agahchen <anissa.agahchen@akimilabs.com> * Update deployStatic.yml * BHBC-949: Manage Project Team - Add + Delete User (#645) - Add project users page - Add project users "add project participant" form - Add delete project user functionality - Update some api project role authorization checks - Update some frontend role check functionality - misc fixes/updates * Update deployStatic.yml * First test (#650) * First test * Update path * - update older node versions to 14 - Increase tsconfig versions - Increase a few package.json versions - Update a few git actions to latest versions * Revert accidental backup file change * Set back to es2015 otherwise the test framework will fail Co-authored-by: Nick Phura <nickphura@gmail.com> * Update deployStatic.yml * Manage system/project roles (#649) * BHBC-948: Allow users to change existing system user roles. * BHBC-1491: Allow users to change existing project participant's roles. * Update deployStatic.yml * [BHBC-948] UI Updates / Cleanup (#652) * Updates to Agancies and Proeject Coordinator name/label * Revert "Merge branch 'dev' of https://github.com/bcgov/biohubbc into dev" This reverts commit 16b5f48, reversing changes made to 1c88d34. * Changes to codes.ts for removing BC and all over for the coordinator vs contact name … (#654) * Cahnges to codes.ts and all over for the coordinator ro contact name change * Update snapshots * Finish BHBC-1505 * Update deployStatic.yml * BHBC-1457 (#651) Implemented EML endpoint and addition to target DwC archive file on S3. Moved all EML creation functionality to middle tier tooling. * Tech debt (#653) * Split up the workflow for uploading project/survey attachments and project/survey reports * associated tests * Updates to the test script and table changes (#658) * All changes * Update to formatting * Remove new table * Bhbc 1499 (#656) Updates to the Moose template and transformation configs * BHBC-1527: system and project roles updated (#659) * update url for download (#660) * Fix wonky survey view/view-for-update queries + misc (#664) * Fix survey view/view-for-update queries + misc * BHBC-1496: Transform Lat/Long to Darwin Core Accepted Format (#667) - Enhance transformations to allow multiple source columns in parse step (uses first non-null value) - Update scrape SQL to account for UTM or LatLong verbatimCoordinates - Add `parseLatLongString` spatial-util function to parse a lat long string. * BHBC-1525 (#669) * BHBC-1525 - initial EML test file and low hanging target testing * remove unused system accounts (#666) * remove unused system accounts * update code to reference previously updated role names * Security rules for PorH (#668) * Security rules for PorH * Endpoint Tests (#661) * Add missing `connection.commit`'s (#671) * Update endpoint role authorization (#670) * Update endpoint role authorization * Update occurrence scrape verbatimCoordinates handling * Bhbc 1400 (#657) Goat template validations and transformations Sheep template validations and transformations * UI Updates / Clean-up (#674) * Update all the BC and DC to tune the resource usage (#678) * BHBC-1523: Add new users (#675) * Added "+ new users" button on Admin user page and added testing for both API and app. * Bhbc 1529- Add custom props to templates (#677) * BHBC-1530: Update Moose transformations to account for all fields. (#680) * BHBC-1530 - Enhance xlsx transformation parse step - Update Moose validation/transformation schemas - Minor refactor to part of transformation code - Update resource page link * BHBC-1520: View user details (#679) - Ability to add system users from the manage users page - Associated endpoints and tests - Page to view user details and their associated projects - Ability to remove user from projects or update their role. - Associated endpoints and tests - Reduce some api code duplication * BHBC-1531 (#683) * BHBC-1531 - adjusted taxonomic codes to exclude those codes that have end date setc * Fix focal species yup schema validation rule * BHBC-1520 (#684) Prevent projects from having no Project Lead role: bug fixes + tests * BHBC-1512: Added zoom for fullscreen map on project details. (#685) Added zoom for fullscreen map on project details * Enhance useInterval hook to support a timeout. Add unit tests. (#686) * BHBC-1512-2: Additional map scroll wheel zoom changes (#687) * BHBC-1512-2: Additional map scroll wheel zoom changes * BHBC-1545: Tech Debt: Re-export all queries via queries.ts. Update custom error naming. (#688) Add index files for all query folders Add queries.ts to re-export all queries. Update all references to existing queries to instead reference queries.ts Rename `CustomError.ts->CustomError` to `custom-error.ts->HTTPError` and all references. Run formatter/linter. * BHBC-1545: Tech Debt: Updated apidoc for /user/* (#681) Update openapi doc for /user/* endpoints Misc unit test updates * BHBC-1503: GCNotfiy (#689) * Created GCNotify Api endpoint for generic email functionality * BHBC-1557: Tech Debt 3 (#690) * Add user-service.ts Move user functions to user-service.ts. Update tests. Add code-service.ts Move code functions to code-service.ts Update tests. Misc root-api-doc.ts cleanup Add swagger-ui container to docker-compose * Add SwaggerUI to docker-compose.yml (for local dev currently) * Minor makefile updates * Updates to error classes * Updates to error logging * Minor test tweak * Handle DatabaseErrors * remove console logs * BHBC-1492: Email Access Request (#692) * BHBC-1557: Tech Debt - Update App route handling and route security. (#693) * Tech debt: Fix partnerships, and update /project/{projectId}/update endpoint (#694) * BHBC-1557: Ke-tech-debt (#698) * updated openApi schemas * Added Survey creation. (#700) * Unify dependabot (#701) * Bump nanoid from 3.1.30 to 3.2.0 in /n8n (#704) * Bump copy-props from 2.0.4 to 2.0.5 in /api (#702) * Bump node-fetch from 2.6.5 to 2.6.7 in /n8n (#705) * BHBC-1557: Add ProjectService. (#699) * Bump lodash from 4.17.20 to 4.17.21 in /app (#703) Bumps [lodash](https://github.com/lodash/lodash) from 4.17.20 to 4.17.21. - [Release notes](https://github.com/lodash/lodash/releases) - [Commits](lodash/lodash@4.17.20...4.17.21) --- updated-dependencies: - dependency-name: lodash dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <anissa.agahchen@akimilabs.com> * BHBC-1493: Approval Email For Access Request (#708) Approval email sent to idir email connected to access request user. * Dev ops scale schemaspy up and down (#709) * Scale SchemaSpy as part of the pipeline to make sure it is current all the time * Make it a one step SchemaSpy cycle * Formatting * Fix typo * Reduce cpu/request limits * Revert "Reduce cpu/request limits" This reverts commit b99f8cb. * Reduce cpu/request limits + Adjust default Log Level (#716) * BCEID bug fix + improvements (#717) * BHBC-1613 - support bceid login (#720) * BHBC-1580: Updates to moose/sheep/goat templates (#725) * Tech debt 6 (#707) * Disable html logging when running app tests. * Update logger utils, make mocha disable winston logger before test execution * Add missing type definition for @tmcw/togeojson * Updates to map components (from resto) * Update typescript and knex versions, remove swagger ui docker compose step, add swagger-ui directly to app * Incorporate dependabot changes * Update eslint config * Run lint-fix using updated eslint rules and fix issues * Update startend date component * Move old `/users` endpoint to `/user/list` * First cut of the postman collection with automatic login (#726) * Isolating Service Code (#724) Port changes from restoration to move functionality to services * Update siteminder url (#736) * Survey- Additional Fields (#731) * create/view/edit survey page with new purpose and methodology form * addition of "ecological season", "intended outcome" and "vantage" lookup tables & removal of common survey methodology - field table name change to "field method" * "survey.objectives" attribute name change to "survey.additional_details" * seeding new lookup tables * re-seed "field method" table * tests * package lock updates for minimist (#740) * dependabot change version for moment (#739) * Bump convict from 6.2.0 to 6.2.2 in /n8n (#745) Bumps [convict](https://github.com/mozilla/node-convict) from 6.2.0 to 6.2.2. - [Release notes](https://github.com/mozilla/node-convict/releases) - [Changelog](https://github.com/mozilla/node-convict/blob/master/CHANGELOG.md) - [Commits](mozilla/node-convict@v6.2.0...v6.2.2) --- updated-dependencies: - dependency-name: convict dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump async from 2.6.3 to 2.6.4 in /app (#743) Bumps [async](https://github.com/caolan/async) from 2.6.3 to 2.6.4. - [Release notes](https://github.com/caolan/async/releases) - [Changelog](https://github.com/caolan/async/blob/v2.6.4/CHANGELOG.md) - [Commits](caolan/async@v2.6.3...v2.6.4) --- updated-dependencies: - dependency-name: async dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump async from 3.2.0 to 3.2.3 in /testing/e2e (#742) Bumps [async](https://github.com/caolan/async) from 3.2.0 to 3.2.3. - [Release notes](https://github.com/caolan/async/releases) - [Changelog](https://github.com/caolan/async/blob/master/CHANGELOG.md) - [Commits](caolan/async@v3.2.0...v3.2.3) --- updated-dependencies: - dependency-name: async dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * BHBC-1688: Add survey radio field (#746) * BHBC-1688: Add new radio button field to survey. * Add github action to write openshift urls * Techdebt (#741) remove default logs fix tests fix code smells * Misc Cleanup (#748) * misc cleanup * Update user seed file * BHBC-1690: Add scroll to error formik component (#749) * Scroll to survey form errors. * Fix vantage codes bug that returned an array with a null element (#750) * Sims taxonomy (#744) * app is working with the taxonomy service * updated snapshots * tests * survey service set up, using it for survey list * skipping broken tests * Remove `wldtaxonomic_units` table from survey queries * merge conflicts fixed * skipped some tests * add TODO comment * Trigger Build * Fix some tests * fixes attachmentList * fixed tests * Update project page test * surveysList test updated * Update ProjectsListPage.test.tsx * Update ReviewAccessRequestForm.test.tsx * test for Active Users List * fix more tests * code smells * Remove unused imports * fix general information bug * fix warning on general information form Co-authored-by: Nick Phura <nickphura@gmail.com> Co-authored-by: Kjartan <Kjartan.Einarsson@quartech.com> * BHBC-1689: Implement API Response Validation (#737) * Add api response validation * Updates * update reponse for the project attachments list * BHBC-1689: Add validation to projects * BHBC-1689: Add response validation to surveys + attachments + observations * BHBC-1689: Add response validation to project attachments. * BHBC-1689: Fix publish_year type for report attachment uploading via POST. * BHBC-1689: Fix api response validation for user data response. * BHBC-1689: Change year_published type from string to number in attachment tests. * BHBC-1689: Update tests * Update occurrence submission response openapi * BHBC-1689: Fix api response validation for uploads * Update summary submission openapi and parse logic * BHBC-1689: Fix all failing tests for reports * BHBC-1689: Make lint-fix and make format-fix. * BHBC-1689: Remove console logs used for testing. * api validation for view.ts and surveys.ts * BHBC-1689: Fix validation for surveys. * BHBC-1689: Fix additional survey validation errors re publish_date. * BHBC-1689: Fix additional survey validation for purpose_and_methodolgy and proprietary_data. Co-authored-by: Anissa Agahchen <anissa.agahchen@akimilabs.com> Co-authored-by: Curtis Upshall <curtisupshall@gmail.com> * Add prettier organize imports plugin (#747) * Add prettier organize imports plugin * Run formatter * move permit endpoint functions to service (#751) * move permit endpoint functions to service * trigger openshift deploy * fix code smell * code smell v2 * Adjust elastic search query config to handle query terms with spaces (#752) * Adjust elastic search query config to handle query terms with spaces * Remove whole word search as it doesnt work, using this style anyways. * BHBC-1720: Added required fields indicators (#756) * BHBC-1720: Added asterisk to Project Boundary heading. * BHBC-1720: Add required indicator for surveyed_all_areas (not finalized). * BHBC-1720: Changed to 'Surveyed Areas *' * BHBC-1720: Update snapshot tests * Hide MU regions from the display list (#754) * removed MU regions list from the display * update api_delete_survey sql function (#757) * date picker fix (#753) * Bhbc-1725 fix deleting funding agency error (#758) * fix funding_source delete error * Bhbc 1728 (#760) Misc UI Clean-up Fixed the report year issue Fixing version to string * BHBC-1731: Fix open api spec (#762) Fix open api specs for survey-view, survey funding sources update, and project-view * Fix permit dropdown (#759) * remove the ability to select a non-sampling permit (when editing a project) * tweak openapi spec for public project view * More openapi fixes (#764) * public attachments received attachment/reports && secured/unsecured correctly * fixed api calls for retrieve signedUrl and to get unsecured files * Email to outlook (#765) * fixed email redirect in header * make agency_project_id nullable * remove permit from the public page * BHBC-1724: Fix edit dialog control clipping. (#761) Fix edit dialog control clipping * BHBC-1727: Add 'Zoom to Boundary Extent' button to SurveyStudyArea. (#763) * BHBC-1727: Add 'Zoom to Boundary Extent' button to SurveyStudyArea. * BHBC-1727: Automatically zoom to boundary extent upon rendering survey details. * BHBC-1727: make lint-fix; make format-fix; * BHBC-1727: Make Zoom to Boundary Extent button appear on top of the map * BHBC-1727: Fix codesmell. * BHBC-1727: Use absolute 'Zoom to boundary extent' IconButton in survey area map editor dialog. * BHBC-1727: Add 'Zoom to boundary extent' IconButton to Project Location map. * BHBC-1727: lint-fix and format-fit * BHBC-1727: Made PR requested changes. * BHBC-1727: Make lint-fix. * BHBC-1727: Update snapshot tests Co-authored-by: Anissa Agahchen <anissa.agahchen@akimilabs.com> * Fix user seed role id * Move to test (#767) * Update README.md * First commit (#566) * First commit * Upload * Update the sec produre for unseceruing an attachment * Version update * Update for single upload button * New fixtures * Update * Survey script * delete survey * Spacing * Update access request page: remove regional offices section, remove non-supported roles from dropdown (#610) * [BHBC-1449] Add Help Link (#614) * Update template validation schemas (#612) * Add migration to update moose SRB/Composition Validation schema * Add Summary Statistics file to resources page * Add Date column to recruitment survey * Fix dependency warnings * Remove unused test function * Update deployStatic.yml * BHBC-1363 (#599) Support project/survey report attachments with meta * Add admin only endpoint to update the api log level at runtime (#619) * Add admin only endpoint to update the api log level at runtime * Update test * Adding Test scripts (#617) * Adding Test scripts * Create project and Survey * Remove second test file * Test Updates/Fixes (#620) Test updates/Fixes * BHBC-1363-2: Fix signed url for reports, update fileupload to support single file only settings. (#621) * BHBC-1461 (#622) * Readme makefile updates (#623) * Update Makefile, Readme, env * Rename BioHub -> SIMS * Add `Order By` clause to species sql (#627) * BHBC-1462: Add new record to proprietary_type lookup table. (#629) - Update code to leverage the `is_first_nation` column from the proprietary_type table. - Previously the code was using the row id * BHBC-1470: View/edit survey and project metadata (#624) BHBC-1470: View/edit survey and project metadata (#624) * BHBC-1478: Update API to check project level permissions. (#630) * Combine dependabot (#634) * Bump tmpl from 1.0.4 to 1.0.5 in /app Bumps [tmpl](https://github.com/daaku/nodejs-tmpl) from 1.0.4 to 1.0.5. - [Release notes](https://github.com/daaku/nodejs-tmpl/releases) - [Commits](https://github.com/daaku/nodejs-tmpl/commits/v1.0.5) --- updated-dependencies: - dependency-name: tmpl dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> * Bump ws from 5.2.2 to 5.2.3 in /app Bumps [ws](https://github.com/websockets/ws) from 5.2.2 to 5.2.3. - [Release notes](https://github.com/websockets/ws/releases) - [Commits](websockets/ws@5.2.2...5.2.3) --- updated-dependencies: - dependency-name: ws dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> * Bump validator from 13.6.0 to 13.7.0 in /n8n Bumps [validator](https://github.com/validatorjs/validator.js) from 13.6.0 to 13.7.0. - [Release notes](https://github.com/validatorjs/validator.js/releases) - [Changelog](https://github.com/validatorjs/validator.js/blob/master/CHANGELOG.md) - [Commits](validatorjs/validator.js@13.6.0...13.7.0) --- updated-dependencies: - dependency-name: validator dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> * Update Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * migration (#637) * Bhbc 1470 (#638) * Small test script and seeding changes (#631) * Small test script and seeding changes * Remove Shreyas from the seed Co-authored-by: Nick Phura <Nick.Phura@quartech.com> * Create zap.yml * Update zap.yml * Create dev.context * Update zap.yml * Zap follow up (#640) * Small test script and seeding changes * Remove Shreyas from the seed * Details for ZAP * Subtitute hardcoded PW with GHA- Secret * [BHBC-1470] Increase Report Summary Input Size (#641) * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * Update zap.yml * BHBC-1467: One page project/survey layout (#636) One page project/survey layout * Test Script update, login and some other details (#646) * Test Script update, login and some other details * Add delay to login * Remove file * Pointing to the right authurl * Path confusion * And again * It is all in the timing * Update readme as per Nick's comment * BHBC-950 (#643) - System admin users can delete other system users. * Update DialogContext.Snackbar(#647) Update snackbar to accept ReactNode as message * Update deployStatic.yml * [BHBC-950] UI Cleanup (#648) * [BHBC-950] UI Cleanup * [BHBC-950] Updating UI * Trigger Build * Update to test script to deal with changed id for report upload * [BHBC-950] Fixing Request Access Table Co-authored-by: Roland Stens <roland.stens@gmail.com> Co-authored-by: Anissa Agahchen <anissa.agahchen@akimilabs.com> * Update deployStatic.yml * BHBC-949: Manage Project Team - Add + Delete User (#645) - Add project users page - Add project users "add project participant" form - Add delete project user functionality - Update some api project role authorization checks - Update some frontend role check functionality - misc fixes/updates * Update deployStatic.yml * First test (#650) * First test * Update path * - update older node versions to 14 - Increase tsconfig versions - Increase a few package.json versions - Update a few git actions to latest versions * Revert accidental backup file change * Set back to es2015 otherwise the test framework will fail Co-authored-by: Nick Phura <nickphura@gmail.com> * Update deployStatic.yml * Manage system/project roles (#649) * BHBC-948: Allow users to change existing system user roles. * BHBC-1491: Allow users to change existing project participant's roles. * Update deployStatic.yml * [BHBC-948] UI Updates / Cleanup (#652) * Updates to Agancies and Proeject Coordinator name/label * Revert "Merge branch 'dev' of https://github.com/bcgov/biohubbc into dev" This reverts commit 16b5f48, reversing changes made to 1c88d34. * Changes to codes.ts for removing BC and all over for the coordinator vs contact name … (#654) * Cahnges to codes.ts and all over for the coordinator ro contact name change * Update snapshots * Finish BHBC-1505 * Update deployStatic.yml * BHBC-1457 (#651) Implemented EML endpoint and addition to target DwC archive file on S3. Moved all EML creation functionality to middle tier tooling. * Tech debt (#653) * Split up the workflow for uploading project/survey attachments and project/survey reports * associated tests * Updates to the test script and table changes (#658) * All changes * Update to formatting * Remove new table * Bhbc 1499 (#656) Updates to the Moose template and transformation configs * BHBC-1527: system and project roles updated (#659) * update url for download (#660) * Fix wonky survey view/view-for-update queries + misc (#664) * Fix survey view/view-for-update queries + misc * BHBC-1496: Transform Lat/Long to Darwin Core Accepted Format (#667) - Enhance transformations to allow multiple source columns in parse step (uses first non-null value) - Update scrape SQL to account for UTM or LatLong verbatimCoordinates - Add `parseLatLongString` spatial-util function to parse a lat long string. * BHBC-1525 (#669) * BHBC-1525 - initial EML test file and low hanging target testing * remove unused system accounts (#666) * remove unused system accounts * update code to reference previously updated role names * Security rules for PorH (#668) * Security rules for PorH * Endpoint Tests (#661) * Add missing `connection.commit`'s (#671) * Update endpoint role authorization (#670) * Update endpoint role authorization * Update occurrence scrape verbatimCoordinates handling * Bhbc 1400 (#657) Goat template validations and transformations Sheep template validations and transformations * UI Updates / Clean-up (#674) * Update all the BC and DC to tune the resource usage (#678) * BHBC-1523: Add new users (#675) * Added "+ new users" button on Admin user page and added testing for both API and app. * Bhbc 1529- Add custom props to templates (#677) * BHBC-1530: Update Moose transformations to account for all fields. (#680) * BHBC-1530 - Enhance xlsx transformation parse step - Update Moose validation/transformation schemas - Minor refactor to part of transformation code - Update resource page link * BHBC-1520: View user details (#679) - Ability to add system users from the manage users page - Associated endpoints and tests - Page to view user details and their associated projects - Ability to remove user from projects or update their role. - Associated endpoints and tests - Reduce some api code duplication * BHBC-1531 (#683) * BHBC-1531 - adjusted taxonomic codes to exclude those codes that have end date setc * Fix focal species yup schema validation rule * BHBC-1520 (#684) Prevent projects from having no Project Lead role: bug fixes + tests * BHBC-1512: Added zoom for fullscreen map on project details. (#685) Added zoom for fullscreen map on project details * Enhance useInterval hook to support a timeout. Add unit tests. (#686) * BHBC-1512-2: Additional map scroll wheel zoom changes (#687) * BHBC-1512-2: Additional map scroll wheel zoom changes * BHBC-1545: Tech Debt: Re-export all queries via queries.ts. Update custom error naming. (#688) Add index files for all query folders Add queries.ts to re-export all queries. Update all references to existing queries to instead reference queries.ts Rename `CustomError.ts->CustomError` to `custom-error.ts->HTTPError` and all references. Run formatter/linter. * BHBC-1545: Tech Debt: Updated apidoc for /user/* (#681) Update openapi doc for /user/* endpoints Misc unit test updates * BHBC-1503: GCNotfiy (#689) * Created GCNotify Api endpoint for generic email functionality * BHBC-1557: Tech Debt 3 (#690) * Add user-service.ts Move user functions to user-service.ts. Update tests. Add code-service.ts Move code functions to code-service.ts Update tests. Misc root-api-doc.ts cleanup Add swagger-ui container to docker-compose * Add SwaggerUI to docker-compose.yml (for local dev currently) * Minor makefile updates * Updates to error classes * Updates to error logging * Minor test tweak * Handle DatabaseErrors * remove console logs * BHBC-1492: Email Access Request (#692) * BHBC-1557: Tech Debt - Update App route handling and route security. (#693) * Tech debt: Fix partnerships, and update /project/{projectId}/update endpoint (#694) * BHBC-1557: Ke-tech-debt (#698) * updated openApi schemas * Added Survey creation. (#700) * Unify dependabot (#701) * Bump nanoid from 3.1.30 to 3.2.0 in /n8n (#704) * Bump copy-props from 2.0.4 to 2.0.5 in /api (#702) * Bump node-fetch from 2.6.5 to 2.6.7 in /n8n (#705) * BHBC-1557: Add ProjectService. (#699) * Bump lodash from 4.17.20 to 4.17.21 in /app (#703) Bumps [lodash](https://github.com/lodash/lodash) from 4.17.20 to 4.17.21. - [Release notes](https://github.com/lodash/lodash/releases) - [Commits](lodash/lodash@4.17.20...4.17.21) --- updated-dependencies: - dependency-name: lodash dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Anissa Agahchen <anissa.agahchen@akimilabs.com> * BHBC-1493: Approval Email For Access Request (#708) Approval email sent to idir email connected to access request user. * Dev ops scale schemaspy up and down (#709) * Scale SchemaSpy as part of the pipeline to make sure it is current all the time * Make it a one step SchemaSpy cycle * Formatting * Fix typo * Reduce cpu/request limits * Revert "Reduce cpu/request limits" This reverts commit b99f8cb. * Reduce cpu/request limits + Adjust default Log Level (#716) * BCEID bug fix + improvements (#717) * BHBC-1613 - support bceid login (#720) * BHBC-1580: Updates to moose/sheep/goat templates (#725) * Tech debt 6 (#707) * Disable html logging when running app tests. * Update logger utils, make mocha disable winston logger before test execution * Add missing type definition for @tmcw/togeojson * Updates to map components (from resto) * Update typescript and knex versions, remove swagger ui docker compose step, add swagger-ui directly to app * Incorporate dependabot changes * Update eslint config * Run lint-fix using updated eslint rules and fix issues * Update startend date component * Move old `/users` endpoint to `/user/list` * First cut of the postman collection with automatic login (#726) * Isolating Service Code (#724) Port changes from restoration to move functionality to services * Update siteminder url (#736) * Survey- Additional Fields (#731) * create/view/edit survey page with new purpose and methodology form * addition of "ecological season", "intended outcome" and "vantage" lookup tables & removal of common survey methodology - field table name change to "field method" * "survey.objectives" attribute name change to "survey.additional_details" * seeding new lookup tables * re-seed "field method" table * tests * package lock updates for minimist (#740) * dependabot change version for moment (#739) * Bump convict from 6.2.0 to 6.2.2 in /n8n (#745) Bumps [convict](https://github.com/mozilla/node-convict) from 6.2.0 to 6.2.2. - [Release notes](https://github.com/mozilla/node-convict/releases) - [Changelog](https://github.com/mozilla/node-convict/blob/master/CHANGELOG.md) - [Commits](mozilla/node-convict@v6.2.0...v6.2.2) --- updated-dependencies: - dependency-name: convict dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump async from 2.6.3 to 2.6.4 in /app (#743) Bumps [async](https://github.com/caolan/async) from 2.6.3 to 2.6.4. - [Release notes](https://github.com/caolan/async/releases) - [Changelog](https://github.com/caolan/async/blob/v2.6.4/CHANGELOG.md) - [Commits](caolan/async@v2.6.3...v2.6.4) --- updated-dependencies: - dependency-name: async dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump async from 3.2.0 to 3.2.3 in /testing/e2e (#742) Bumps [async](https://github.com/caolan/async) from 3.2.0 to 3.2.3. - [Release notes](https://github.com/caolan/async/releases) - [Changelog](https://github.com/caolan/async/blob/master/CHANGELOG.md) - [Commits](caolan/async@v3.2.0...v3.2.3) --- updated-dependencies: - dependency-name: async dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * BHBC-1688: Add survey radio field (#746) * BHBC-1688: Add new radio button field to survey. * Add github action to write openshift urls * Techdebt (#741) remove default logs fix tests fix code smells * Misc Cleanup (#748) * misc cleanup * Update user seed file * BHBC-1690: Add scroll to error formik component (#749) * Scroll to survey form errors. * Fix vantage codes bug that returned an array with a null element (#750) * Sims taxonomy (#744) * app is working with the taxonomy service * updated snapshots * tests * survey service set up, using it for survey list * skipping broken tests * Remove `wldtaxonomic_units` table from survey queries * merge conflicts fixed * skipped some tests * add TODO comment * Trigger Build * Fix some tests * fixes attachmentList * fixed tests * Update project page test * surveysList test updated * Update ProjectsListPage.test.tsx * Update ReviewAccessRequestForm.test.tsx * test for Active Users List * fix more tests * code smells * Remove unused imports * fix general information bug * fix warning on general information form Co-authored-by: Nick Phura <nickphura@gmail.com> Co-authored-by: Kjartan <Kjartan.Einarsson@quartech.com> * BHBC-1689: Implement API Response Validation (#737) * Add api response validation * Updates * update reponse for the project attachments list * BHBC-1689: Add validation to projects * BHBC-1689: Add response validation to surveys + attachments + observations * BHBC-1689: Add response validation to project attachments. * BHBC-1689: Fix publish_year type for report attachment uploading via POST. * BHBC-1689: Fix api response validation for user data response. * BHBC-1689: Change year_published type from string to number in attachment tests. * BHBC-1689: Update tests * Update occurrence submission response openapi * BHBC-1689: Fix api response validation for uploads * Update summary submission openapi and parse logic * BHBC-1689: Fix all failing tests for reports * BHBC-1689: Make lint-fix and make format-fix. * BHBC-1689: Remove console logs used for testing. * api validation for view.ts and surveys.ts * BHBC-1689: Fix validation for surveys. * BHBC-1689: Fix additional survey validation errors re publish_date. * BHBC-1689: Fix additional survey validation for purpose_and_methodolgy and proprietary_data. Co-authored-by: Anissa Agahchen <anissa.agahchen@akimilabs.com> Co-authored-by: Curtis Upshall <curtisupshall@gmail.com> * Add prettier organize imports plugin (#747) * Add prettier organize imports plugin * Run formatter * move permit endpoint functions to service (#751) * move permit endpoint functions to service * trigger openshift deploy * fix code smell * code smell v2 * Adjust elastic search query config to handle query terms with spaces (#752) * Adjust elastic search query config to handle query terms with spaces * Remove whole word search as it doesnt work, using this style anyways. * BHBC-1720: Added required fields indicators (#756) * BHBC-1720: Added asterisk to Project Boundary heading. * BHBC-1720: Add required indicator for surveyed_all_areas (not finalized). * BHBC-1720: Changed to 'Surveyed Areas *' * BHBC-1720: Update snapshot tests * Hide MU regions from the display list (#754) * removed MU regions list from the display * update api_delete_survey sql function (#757) * date picker fix (#753) * Bhbc-1725 fix deleting funding agency error (#758) * fix funding_source delete error * Bhbc 1728 (#760) Misc UI Clean-up Fixed the report year issue Fixing version to string * BHBC-1731: Fix open api spec (#762) Fix open api specs for survey-view, survey funding sources update, and project-view * Fix permit dropdown (#759) * remove the ability to select a non-sampling permit (when editing a project) * tweak openapi spec for public project view * More openapi fixes (#764) * public attachments received attachment/reports && secured/unsecured correctly * fixed api calls for retrieve signedUrl and to get unsecured files * Email to outlook (#765) * fixed email redirect in header * make agency_project_id nullable * remove permit from the public page * BHBC-1724: Fix edit dialog control clipping. (#761) Fix edit dialog control clipping * BHBC-1727: Add 'Zoom to Boundary Extent' button to SurveyStudyArea. (#763) * BHBC-1727: Add 'Zoom to Boundary Extent' button to SurveyStudyArea. * BHBC-1727: Automatically zoom to boundary extent upon rendering survey details. * BHBC-1727: make lint-fix; make format-fix; * BHBC-1727: Make Zoom to Boundary Extent button appear on top of the map * BHBC-1727: Fix codesmell. * BHBC-1727: Use absolute 'Zoom to boundary extent' IconButton in survey area map editor dialog. * BHBC-1727: Add 'Zoom to boundary extent' IconButton to Project Location map. * BHBC-1727: lint-fix and format-fit * BHBC-1727: Made PR requested changes. * BHBC-1727: Make lint-fix. * BHBC-1727: Update snapshot tests Co-authored-by: Anissa Agahchen <anissa.agahchen@akimilabs.com> * Fix user seed role id Co-authored-by: Nick Phura <Nick.Phura@quartech.com> Co-authored-by: jeznorth <twenty15creative@gmail.com> Co-authored-by: Anissa Agahchen <anissa.agahchen@akimilabs.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Nick Phura <nickphura@gmail.com> Co-authored-by: Charlie Garrett-Jones <32178098+cgarrettjones@users.noreply.github.com> Co-authored-by: Kjartan <35311998+KjartanE@users.noreply.github.com> Co-authored-by: Shrey Patel <60997794+shreypdev@users.noreply.github.com> Co-authored-by: Kjartan <Kjartan.Einarsson@quartech.com> Co-authored-by: Curtis Upshall <curtisupshall@gmail.com> * BHBC-1700: Move to Test (#774) * Fix/Enhancement: Port improved user access request functionality from Restoration, Adjust access request approval to account for existing bceid-basic-business identity sources (#771) - Port improved user access request functionality from Restoration - Better/fixed handling for approving/denying user requests - Adjust access request approval to account for existing bceid-basic-business identity sources - Existing access requests created before we accounted for bceid-basic-and-business identity sources should no longer throw an error when trying to approve/deny them. * BHBC-1730: Use centerOfMass instead of centroid for project area center (#770) * BHBC-1730: Use centerOfMass instead of centroid for project area center point. * BHBC-1736: Fix Read More/Read Less idempotence bug (#772) * BHBC-1736: Tighten qualification for string truncating * BHBC-1736: Fix null coalesce * BHBC-1736: Change variable name to be more descriptive Co-authored-by: Curtis Upshall <curtisupshall@gmail.com> * BHBC-1700: Move to Test (#777) * Bugfix: Incorrect identity source enum (#776) - account for the fact that openapi enums are case sensitive Co-authored-by: Roland Stens <roland.stens@gmail.com> Co-authored-by: jeznorth <twenty15creative@gmail.com> Co-authored-by: Anissa Agahchen <anissa.agahchen@akimilabs.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Charlie Garrett-Jones <32178098+cgarrettjones@users.noreply.github.com> Co-authored-by: Kjartan <35311998+KjartanE@users.noreply.github.com> Co-authored-by: Shrey Patel <60997794+shreypdev@users.noreply.github.com> Co-authored-by: Kjartan <Kjartan.Einarsson@quartech.com> Co-authored-by: Curtis Upshall <curtisupshall@gmail.com>
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Fixing the login: