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CCDM Bioinformatics

10 followers
https://ccdmb.github.io

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BioDendro BioDendro Public

A package to cluster and visualise MS/MS spectral data

Jupyter Notebook 11 1
catastrophy catastrophy Public

CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.

Python 6
predector predector Public

Effector prediction pipeline based on protein properties.

Shell 14 8

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All Dockerfile Groovy HTML Jupyter Notebook Nextflow Python Shell

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Showing 10 of 26 repositories

predector Public
Effector prediction pipeline based on protein properties.

ccdmb/predector’s past year of commit activity

Shell 14 Apache-2.0 8 15 (1 issue needs help) 1 Updated Jul 18, 2025
EffectorFisher-core Public
🧬 EffectorFisher links pangenome isoforms to disease traits to predict phenotype-associated effectors. 🌾🦠

ccdmb/EffectorFisher-core’s past year of commit activity

Python 0 MIT 0 0 0 Updated Jul 16, 2025
predector-utils Public
Utilities for running the predector pipeline.

ccdmb/predector-utils’s past year of commit activity

Python 0 Apache-2.0 0 2 0 Updated Apr 11, 2025
postasm Public Forked from darcyabjones/postasm
QC and tidying on assembled genomes.

ccdmb/postasm’s past year of commit activity

Groovy 0 Apache-2.0 1 0 0 Updated Nov 15, 2024
pante Public Forked from darcyabjones/pante
A pipeline for predicting and masking transposable elements in multiple genomes.

ccdmb/pante’s past year of commit activity

Groovy 0 Apache-2.0 10 0 0 Updated Nov 15, 2024
qcflow Public Forked from darcyabjones/qcflow
Perform basic QC on illumina data

ccdmb/qcflow’s past year of commit activity

Groovy 0 MIT 1 0 0 Updated Nov 15, 2024
mitoflow Public Forked from darcyabjones/mitoflow
A small pipeline for assembling mitochondrial genomes and filtering reads prior to assembly.

ccdmb/mitoflow’s past year of commit activity

Groovy 0 MIT 1 0 0 Updated Nov 15, 2024
LR-toolkit Public
🌱 Toolkit for long reads RNAseq data analysis

ccdmb/LR-toolkit’s past year of commit activity

Nextflow 1 0 3 0 Updated Jan 17, 2024
ccdmb.github.io Public
Front page for the CCDM bioinformatics group.

ccdmb/ccdmb.github.io’s past year of commit activity

0 Apache-2.0 0 0 0 Updated Nov 13, 2023
nanopore_assembly Public

ccdmb/nanopore_assembly’s past year of commit activity

Nextflow 0 0 0 0 Updated May 10, 2023

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