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change print by return so it can be used in scripts
  • Loading branch information
iribirii committed Jan 24, 2024
commit 50e3e27f949a7d6b6361e70b0db7bad2a477bb15
11 changes: 7 additions & 4 deletions rmsd/calculate_rmsd.py
Original file line number Diff line number Diff line change
Expand Up @@ -1877,7 +1877,8 @@ def parse_arguments(arguments: Optional[Union[str, List[str]]] = None) -> argpar
return args


def main(args: Optional[List[str]] = None) -> None:
# def main(args: Optional[List[str]] = None) -> None:
def main(args: Optional[List[str]] = None):

# Parse arguments
settings = parse_arguments(args)
Expand Down Expand Up @@ -2051,15 +2052,17 @@ def main(args: Optional[List[str]] = None) -> None:

# done and done
xyz = set_coordinates(q_all_atoms, q_coord, title=f"{settings.structure_b} - modified")
print(xyz)
return xyz

else:

if not result_rmsd:
result_rmsd = rmsd_method(p_coord, q_coord)

print("{0}".format(result_rmsd))
# print("{0}".format(result_rmsd))
return result_rmsd


if __name__ == "__main__":
main() # pragma: no cover
result = main() # pragma: no cover
print(f'result {result}')