add --toc-recurse-submodules argument

README.md

@@ -170,6 +170,7 @@ Codecov-cli supports user input. These inputs, along with their descriptions and
 |-s, --dir, --coverage-files-search-root-folder | Folder where to search for coverage files default: (Current Working Directory) | Optional
 |--exclude, --coverage-files-search-exclude-folder | Folders to exclude from search | Optional
 |-f, --file, --coverage-files-search-direct-file | Explicit files to upload | Optional
+|--recurse-submodules | Whether to enumerate files inside of submodules for path-fixing purposes. Off by default. | Optional
 |--disable-search | Disable search for coverage files. This is helpful when specifying what files you want to upload with the --file option.| Optional
 |-b, --build, --build-code | Specify the build number manually | Optional
 |--build-url | The URL of the build where this is running | Optional

codecov_cli/commands/upload.py

@@ -66,6 +66,12 @@ def _turn_env_vars_into_dict(ctx, params, value):
         multiple=True,
         default=[],
     ),
+    click.option(
+        "--recurse-submodules",
+        help="Whether to enumerate files inside of submodules for path-fixing purposes. Off by default.",
+        is_flag=True,
+        default=False,
+    ),
     click.option(
         "--disable-search",
         help="Disable search for coverage files. This is helpful when specifying what files you want to upload with the --file option.",
@@ -242,6 +248,7 @@ def do_upload(
     network_root_folder: pathlib.Path,
     plugin_names: typing.List[str],
     pull_request_number: typing.Optional[str],
+    recurse_submodules: bool,
     report_type_str: str,
     slug: typing.Optional[str],
     swift_project: typing.Optional[str],
@@ -297,6 +304,7 @@ def do_upload(
                 network_root_folder=network_root_folder,
                 plugin_names=plugin_names,
                 pull_request_number=pull_request_number,
+                recurse_submodules=recurse_submodules,
                 report_code=report_code,
                 slug=slug,
                 swift_project=swift_project,

codecov_cli/commands/upload_coverage.py

@@ -56,6 +56,7 @@ def upload_coverage(
     parent_sha: typing.Optional[str],
     plugin_names: typing.List[str],
     pull_request_number: typing.Optional[str],
+    recurse_submodules: bool,
     report_code: str,
     report_type_str: str,
     slug: typing.Optional[str],
@@ -115,6 +116,7 @@ def upload_coverage(
                     parent_sha=parent_sha,
                     plugin_names=plugin_names,
                     pull_request_number=pull_request_number,
+                    recurse_submodules=recurse_submodules,
                     report_code=report_code,
                     slug=slug,
                     swift_project=swift_project,
@@ -173,6 +175,7 @@ def upload_coverage(
                     network_root_folder=network_root_folder,
                     plugin_names=plugin_names,
                     pull_request_number=pull_request_number,
+                    recurse_submodules=recurse_submodules,
                     report_code=report_code,
                     report_type_str=report_type_str,
                     slug=slug,

codecov_cli/commands/upload_process.py

@@ -54,6 +54,7 @@ def upload_process(
     parent_sha: typing.Optional[str],
     plugin_names: typing.List[str],
     pull_request_number: typing.Optional[str],
+    recurse_submodules: bool,
     report_code: str,
     report_type_str: str,
     slug: typing.Optional[str],
@@ -122,6 +123,7 @@ def upload_process(
                 network_root_folder=network_root_folder,
                 plugin_names=plugin_names,
                 pull_request_number=pull_request_number,
+                recurse_submodules=recurse_submodules,
                 report_code=report_code,
                 report_type_str=report_type_str,
                 slug=slug,

codecov_cli/helpers/versioning_systems.py

@@ -25,7 +25,7 @@ def get_network_root(self) -> t.Optional[Path]:
 
     @abstractmethod
     def list_relevant_files(
-        self, directory: t.Optional[Path] = None
+        self, directory: t.Optional[Path] = None, recurse_submodules: bool = False
     ) -> t.Optional[t.List[str]]:
         pass
 
@@ -125,14 +125,17 @@ def get_network_root(self):
             return Path(p.stdout.decode().rstrip())
         return None
 
-    def list_relevant_files(self, directory: t.Optional[Path] = None) -> t.List[str]:
+    def list_relevant_files(
+        self, directory: t.Optional[Path] = None, recurse_submodules: bool = False
+    ) -> t.List[str]:
         dir_to_use = directory or self.get_network_root()
         if dir_to_use is None:
             raise ValueError("Can't determine root folder")
 
-        res = subprocess.run(
-            ["git", "-C", str(dir_to_use), "ls-files"], capture_output=True
-        )
+        cmd = ["git", "-C", str(dir_to_use), "ls-files"]
+        if recurse_submodules:
+            cmd.append("--recurse-submodules")
+        res = subprocess.run(cmd, capture_output=True)
 
         return [
             (
@@ -155,5 +158,7 @@ def get_network_root(self):
     def get_fallback_value(self, fallback_field: FallbackFieldEnum):
         return None
 
-    def list_relevant_files(self, directory: t.Optional[Path] = None) -> t.List[str]:
+    def list_relevant_files(
+        self, directory: t.Optional[Path] = None, recurse_submodules: bool = False
+    ) -> t.List[str]:
         return []

codecov_cli/services/upload/__init__.py

@@ -56,6 +56,7 @@ def do_upload_logic(
     parent_sha: typing.Optional[str] = None,
     plugin_names: typing.List[str],
     pull_request_number: typing.Optional[str],
+    recurse_submodules: bool = False,
     report_code: str,
     slug: typing.Optional[str],
     swift_project: typing.Optional[str],
@@ -87,6 +88,7 @@ def do_upload_logic(
     )
     network_finder = select_network_finder(
         versioning_system,
+        recurse_submodules=recurse_submodules,
         network_filter=network_filter,
         network_prefix=network_prefix,
         network_root_folder=network_root_folder,

codecov_cli/services/upload/network_finder.py

@@ -8,17 +8,21 @@ class NetworkFinder(object):
     def __init__(
         self,
         versioning_system: VersioningSystemInterface,
+        recurse_submodules: bool,
         network_filter: typing.Optional[str],
         network_prefix: typing.Optional[str],
         network_root_folder: pathlib.Path,
     ):
         self.versioning_system = versioning_system
+        self.recurse_submodules = recurse_submodules
         self.network_filter = network_filter
         self.network_prefix = network_prefix
         self.network_root_folder = network_root_folder
 
     def find_files(self, ignore_filters=False) -> typing.List[str]:
-        files = self.versioning_system.list_relevant_files(self.network_root_folder)
+        files = self.versioning_system.list_relevant_files(
+            self.network_root_folder, self.recurse_submodules
+        )
 
         if files and not ignore_filters:
             if self.network_filter:
@@ -31,12 +35,14 @@ def find_files(self, ignore_filters=False) -> typing.List[str]:
 
 def select_network_finder(
     versioning_system: VersioningSystemInterface,
+    recurse_submodules: bool,
     network_filter: typing.Optional[str],
     network_prefix: typing.Optional[str],
     network_root_folder: pathlib.Path,
 ):
     return NetworkFinder(
         versioning_system,
+        recurse_submodules,
         network_filter,
         network_prefix,
         network_root_folder,

codecov_cli/services/upload_coverage/__init__.py

@@ -16,6 +16,7 @@ def upload_coverage_logic(
     build_code: typing.Optional[str],
     build_url: typing.Optional[str],
     commit_sha: str,
+    recurse_submodules: bool,
     disable_file_fixes: bool,
     disable_search: bool,
     dry_run: bool,
@@ -58,6 +59,7 @@ def upload_coverage_logic(
         build_code=build_code,
         build_url=build_url,
         commit_sha=commit_sha,
+        recurse_submodules=recurse_submodules,
         disable_file_fixes=disable_file_fixes,
         disable_search=disable_search,
         dry_run=dry_run,

codecovcli_commands

@@ -93,6 +93,9 @@ Options:
                                   specified files, please consider using
                                   --disable-search to disable uploading other
                                   files.
+  --recurse-submodules            Whether to enumerate files inside of
+                                  submodules for path-fixing purposes. Off by
+                                  default.
   --disable-search                Disable search for coverage files. This is
                                   helpful when specifying what files you want
                                   to upload with the --file option.
@@ -274,6 +277,9 @@ Options:
                                   specified files, please consider using
                                   --disable-search to disable uploading other
                                   files.
+  --recurse-submodules            Whether to enumerate files inside of
+                                  submodules for path-fixing purposes. Off by
+                                  default.
   --disable-search                Disable search for coverage files. This is
                                   helpful when specifying what files you want
                                   to upload with the --file option.
@@ -347,6 +353,9 @@ Options:
                                   specified files, please consider using
                                   --disable-search to disable uploading other
                                   files.
+  --recurse-submodules            Whether to enumerate files inside of
+                                  submodules for path-fixing purposes. Off by
+                                  default.
   --disable-search                Disable search for coverage files. This is
                                   helpful when specifying what files you want
                                   to upload with the --file option.

tests/commands/test_invoke_upload_coverage.py

@@ -91,6 +91,9 @@ def test_upload_coverage_options(mocker):
             "                                  wish to only upload the specified files,",
             "                                  please consider using --disable-search to",
             "                                  disable uploading other files.",
+            "  --recurse-submodules            Whether to enumerate files inside of",
+            "                                  submodules for path-fixing purposes. Off by",
+            "                                  default.",
             "  --disable-search                Disable search for coverage files. This is",
             "                                  helpful when specifying what files you want to",
             "                                  upload with the --file option.",

tests/commands/test_invoke_upload_process.py

@@ -91,6 +91,9 @@ def test_upload_process_options(mocker):
             "                                  wish to only upload the specified files,",
             "                                  please consider using --disable-search to",
             "                                  disable uploading other files.",
+            "  --recurse-submodules            Whether to enumerate files inside of",
+            "                                  submodules for path-fixing purposes. Off by",
+            "                                  default.",
             "  --disable-search                Disable search for coverage files. This is",
             "                                  helpful when specifying what files you want to",
             "                                  upload with the --file option.",

tests/helpers/test_network_finder.py

@@ -15,6 +15,7 @@ def test_find_files(mocker, tmp_path):
     assert (
         NetworkFinder(
             versioning_system=mocked_vs,
+            recurse_submodules=False,
             network_filter=None,
             network_prefix=None,
             network_root_folder=tmp_path,
@@ -24,6 +25,7 @@ def test_find_files(mocker, tmp_path):
     assert (
         NetworkFinder(
             versioning_system=mocked_vs,
+            recurse_submodules=False,
             network_filter="hello",
             network_prefix="bello",
             network_root_folder=tmp_path,
@@ -33,13 +35,14 @@ def test_find_files(mocker, tmp_path):
     assert (
         NetworkFinder(
             versioning_system=mocked_vs,
+            recurse_submodules=False,
             network_filter="hello",
             network_prefix="bello",
             network_root_folder=tmp_path,
         ).find_files(True)
         == filenames
     )
-    mocked_vs.list_relevant_files.assert_called_with(tmp_path)
+    mocked_vs.list_relevant_files.assert_called_with(tmp_path, False)
 
 
 def test_find_files_with_filter(mocker, tmp_path):
@@ -52,6 +55,7 @@ def test_find_files_with_filter(mocker, tmp_path):
     assert (
         NetworkFinder(
             versioning_system=mocked_vs,
+            recurse_submodules=False,
             network_filter="hello",
             network_prefix=None,
             network_root_folder=tmp_path,
@@ -61,13 +65,14 @@ def test_find_files_with_filter(mocker, tmp_path):
     assert (
         NetworkFinder(
             versioning_system=mocked_vs,
+            recurse_submodules=False,
             network_filter="hello",
             network_prefix="bello",
             network_root_folder=tmp_path,
         ).find_files(True)
         == filenames
     )
-    mocked_vs.list_relevant_files.assert_called_with(tmp_path)
+    mocked_vs.list_relevant_files.assert_called_with(tmp_path, False)
 
 
 def test_find_files_with_prefix(mocker, tmp_path):
@@ -80,6 +85,7 @@ def test_find_files_with_prefix(mocker, tmp_path):
     assert (
         NetworkFinder(
             versioning_system=mocked_vs,
+            recurse_submodules=False,
             network_filter=None,
             network_prefix="hello",
             network_root_folder=tmp_path,
@@ -89,13 +95,14 @@ def test_find_files_with_prefix(mocker, tmp_path):
     assert (
         NetworkFinder(
             versioning_system=mocked_vs,
+            recurse_submodules=False,
             network_filter="hello",
             network_prefix="bello",
             network_root_folder=tmp_path,
         ).find_files(True)
         == filenames
     )
-    mocked_vs.list_relevant_files.assert_called_with(tmp_path)
+    mocked_vs.list_relevant_files.assert_called_with(tmp_path, False)
 
 
 def test_find_files_with_filter_and_prefix(mocker, tmp_path):
@@ -108,6 +115,7 @@ def test_find_files_with_filter_and_prefix(mocker, tmp_path):
     assert (
         NetworkFinder(
             versioning_system=mocked_vs,
+            recurse_submodules=False,
             network_filter="hello",
             network_prefix="bello",
             network_root_folder=tmp_path,
@@ -117,10 +125,11 @@ def test_find_files_with_filter_and_prefix(mocker, tmp_path):
     assert (
         NetworkFinder(
             versioning_system=mocked_vs,
+            recurse_submodules=False,
             network_filter="hello",
             network_prefix="bello",
             network_root_folder=tmp_path,
         ).find_files(True)
         == filenames
     )
-    mocked_vs.list_relevant_files.assert_called_with(tmp_path)
+    mocked_vs.list_relevant_files.assert_called_with(tmp_path, False)

tests/helpers/test_versioning_systems.py

@@ -130,3 +130,14 @@ def test_list_relevant_files_fails_if_no_root_is_found(self, mocker):
         vs = GitVersioningSystem()
         with pytest.raises(ValueError):
             vs.list_relevant_files()
+
+    def test_list_relevant_files_recurse_submodules(self, mocker, tmp_path):
+        subproc_run = mocker.patch(
+            "codecov_cli.helpers.versioning_systems.subprocess.run"
+        )
+        vs = GitVersioningSystem()
+        _ = vs.list_relevant_files(tmp_path, recurse_submodules=True)
+        subproc_run.assert_called_with(
+            ["git", "-C", str(tmp_path), "ls-files", "--recurse-submodules"],
+            capture_output=True,
+        )

tests/services/upload/test_upload_collector.py

@@ -167,7 +167,7 @@ def test_generate_upload_data(tmp_path):
 
     file_finder = FileFinder(tmp_path)
 
-    network_finder = NetworkFinder(GitVersioningSystem(), None, None, None)
+    network_finder = NetworkFinder(GitVersioningSystem(), False, None, None, None)
 
     collector = UploadCollector([], network_finder, file_finder, None)
 
@@ -187,7 +187,7 @@ def test_generate_upload_data_with_none_network(
     (tmp_path / "coverage.xml").touch()
 
     file_finder = FileFinder(tmp_path)
-    network_finder = NetworkFinder(NoVersioningSystem(), None, None, None)
+    network_finder = NetworkFinder(NoVersioningSystem(), False, None, None, None)
 
     collector = UploadCollector([], network_finder, file_finder, {})