cpockrandt
Follow
-
opensearch-helm-charts Public
Forked from opensearch-project/helm-charts☸️ A community repository for Helm Charts of OpenSearch Project.
Smarty Apache License 2.0 UpdatedDec 12, 2025 -
-
genmap Public
GenMap - Fast and Exact Computation of Genome Mappability
-
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedJun 22, 2022 -
krakenuniq Public
Forked from fbreitwieser/krakenuniq🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
C++ UpdatedMay 31, 2022 -
PhyloCSFpp Public
PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF files with PhyloCSF and confidence scores.
-
-
WFA Public
Forked from smarco/WFA-paperWavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment
C Other UpdatedAug 14, 2021 -
MMseqs2 Public
Forked from soedinglab/MMseqs2MMseqs2: ultra fast and sensitive search and clustering suite
C GNU General Public License v3.0 UpdatedJun 25, 2021 -
libBigWig Public
Forked from dpryan79/libBigWigA C library for handling bigWig files
C MIT License UpdatedMar 9, 2021 -
tiebrush Public
Forked from alevar/tiebrushsummarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)
C++ MIT License UpdatedNov 11, 2020 -
db-prices Public
Forked from juliuste/db-pricesFind journey prices using the DB Sparpreise API.
JavaScript ISC License UpdatedMay 31, 2020 -
Script to create a kraken/krakenuniq database and removing contamination in genomes
-
seqan3 Public
Forked from seqan/seqan3The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
C++ Other UpdatedFeb 20, 2020 -
sdsl-lite Public
Forked from xxsds/sdsl-liteSuccinct Data Structure Library 3.0 (unstable, prerelease)
C++ Other UpdatedOct 28, 2019 -
KMC Public
Forked from refresh-bio/KMCFast and frugal disk based k-mer counter
C++ UpdatedOct 22, 2019 -
OptimalSearchScheme Public
Forked from kianfar77/OptimumSearchSchemesMIP Code and Computational Experiment Code for the article "Optimum Search Schemes for Approximate String Matching Using Bidirectional FM-Index"