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Remove order constraints in test_pipeline_generation
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CBroz1 committed Jun 23, 2022
commit a875dcaf8f3094311449dedfb8858d0b3f8d452f
2 changes: 1 addition & 1 deletion docker/docker-compose-test.yaml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# docker-compose -f ./docker/docker-compose-test.yaml up --build --force-recreate
# docker-compose -f ./docker/docker-compose-test.yaml up --build --force-recreate --detached
# docker-compose -f ./docker/docker-compose-test.yaml down --volumes

version: "2.4"
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23 changes: 10 additions & 13 deletions tests/test_pipeline_generation.py
Original file line number Diff line number Diff line change
@@ -1,22 +1,19 @@
from . import dj_config, pipeline

__all__ = ['dj_config', 'pipeline']
__all__ = ["dj_config", "pipeline"]


def test_generate_pipeline(pipeline):
subject = pipeline['subject']
session = pipeline['session']
miniscope = pipeline['miniscope']
Equipment = pipeline['Equipment']

subject_tbl, *_ = session.Session.parents(as_objects=True)
subject = pipeline["subject"]
session = pipeline["session"]
miniscope = pipeline["miniscope"]
Equipment = pipeline["Equipment"]

# Test Element connection from lab, subject to Session
assert subject_tbl.full_table_name == subject.Subject.full_table_name
assert subject.Subject.full_table_name in session.Session.parents()

# Test Element connection from Session to miniscope
session_tbl, equipment_tbl, _ = miniscope.Recording.parents(as_objects=True)
assert session_tbl.full_table_name == session.Session.full_table_name
assert equipment_tbl.full_table_name == Equipment.full_table_name
assert 'mask_npix' in miniscope.Segmentation.Mask.heading.secondary_attributes
assert 'activity_trace' in miniscope.Activity.Trace.heading.secondary_attributes
assert session.Session.full_table_name in miniscope.Recording.parents()
assert Equipment.full_table_name in miniscope.Recording.parents()
assert "mask_npix" in miniscope.Segmentation.Mask.heading.secondary_attributes
assert "activity_trace" in miniscope.Activity.Trace.heading.secondary_attributes