Rename process.py to populate_all.py

workflow_miniscope/populate_all.py

@@ -0,0 +1,31 @@
+from workflow_miniscope.pipeline import miniscope
+import warnings
+
+warnings.filterwarnings('ignore')
+
+
+def run(display_progress=True):
+
+    populate_settings = {'display_progress': display_progress,
+                         'reserve_jobs': False,
+                         'suppress_errors': False}
+
+    print('\n---- Populate imported and computed tables ----')
+
+    miniscope.RecordingInfo.populate(**populate_settings)
+
+    miniscope.Processing.populate(**populate_settings)
+
+    miniscope.MotionCorrection.populate(**populate_settings)
+
+    miniscope.Segmentation.populate(**populate_settings)
+
+    miniscope.Fluorescence.populate(**populate_settings)
+
+    miniscope.Activity.populate(**populate_settings)
+
+    print('\n---- Successfully completed workflow_miniscope/populate_all.py ----')
+
+
+if __name__ == '__main__':
+    run()