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1. Hybrid-Metagenomics-Analysis-of-Soil-Biocrust-Microbiome-Long-Short-Reads- Hybrid-Metagenomics-Analysis-of-Soil-Biocrust-Microbiome-Long-Short-Reads- Public

   This repository contains a pipeline for hybrid metagenomics analysis using individual tools via a bash script. , chaining tools for QC, trimming, hybrid assembly, mapping, binning, annotation, and …

   Shell 1

2. long-read-metatranscriptomics-microbiome-analysis long-read-metatranscriptomics-microbiome-analysis Public

   Pipeline for long-read metatranscriptomics analysis of BSFL gut microbiome.

   Python 1

3. Metatranscriptomics-analysis Metatranscriptomics-analysis Public

   This repository contains code and data for a metatranscriptomics study on COVID-19. We analyze SARS-CoV-2 and host transcriptomes to understand their interactions in patients. The project includes …

   Jupyter Notebook 1

4. Cancer-transcriptomics-analysis-project- Cancer-transcriptomics-analysis-project- Public

   Python 1

5. Microbiome-Immunotherapy-Analysis Microbiome-Immunotherapy-Analysis Public

   Bioinformatics workflow for analyzing gut microbiome in cancer immunotherapy response

   Python

6. Multi-Omics-Cancer-Data-Integration-Pipeline Multi-Omics-Cancer-Data-Integration-Pipeline Public

   A comprehensive bioinformatics pipeline for integrating and analyzing multi-omics cancer data from The Cancer Genome Atlas (TCGA). This pipeline addresses one of the most pressing challenges in mod…

   Python 2