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  1. nf-core/rnaseq nf-core/rnaseq Public

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

    Nextflow 1.3k 859

  2. nf-core/modules nf-core/modules Public

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    Nextflow 408 1k

  3. scnanoseq scnanoseq Public

    Forked from nf-core/scnanoseq

    Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics

    Nextflow

  4. clara-parabricks-workflows/Parabricks-WDL-Workflows clara-parabricks-workflows/Parabricks-WDL-Workflows Public

    Accelerated genomics workflows in the Workflow Description Language

    WDL 37 9

  5. NVIDIA-AI-Blueprints/genomics-analysis NVIDIA-AI-Blueprints/genomics-analysis Public

    Jupyter Notebook 6 4