fix pervasive documenter issues

.gitignore

@@ -16,6 +16,8 @@ deps/src/
 # Build artifacts for creating documentation generated by the Documenter package
 docs/build/
 docs/site/
+## generated by make.jl
+docs/src/index.md
 
 # File generated by Pkg, the package manager, based on a corresponding Project.toml
 # It records a fixed state of all packages used by the project. As such, it should not be

README.md

@@ -11,10 +11,10 @@
       <td align="center">
         <b>Documentation</b>
         <br>
-        <a href="https://harmoniqs.github.io/QuantumCollocation.jl/stable/">
+        <a href="https://docs.harmoniqs.co/QuantumCollocation/dev/">
           <img src="https://img.shields.io/badge/docs-stable-blue.svg" alt="Stable"/>
         </a>
-        <a href="https://harmoniqs.github.io/QuantumCollocation.jl/dev/">
+        <a href="https://docs.harmoniqs.co/QuantumCollocation/dev/">
           <img src="https://img.shields.io/badge/docs-dev-blue.svg" alt="Dev"/>
         </a>
         <a href="https://arxiv.org/abs/2305.03261">

docs/make.jl

@@ -4,7 +4,7 @@ using Literate
 
 push!(LOAD_PATH, joinpath(@__DIR__, "..", "src"))
 
-@info "Building Documenter site for NamedTrajectories.jl"
+@info "Building Documenter site for QuantumCollocation.jl"
 open(joinpath(@__DIR__, "src", "index.md"), write = true) do io
     for line in eachline(joinpath(@__DIR__, "..", "README.md"))
         if occursin("<!--", line) && occursin("-->", line)

docs/src/lib.md

@@ -28,4 +28,9 @@ Modules = [QuantumCollocation.TrajectoryInitialization]
 ## Trajectory Interpolations
 ```@autodocs
 Modules = [QuantumCollocation.TrajectoryInterpolations]
+```
+
+## Quantum System Templates
+```@autodocs
+Modules = [QuantumCollocation.QuantumSystemTemplates]
 ```