jtschwar
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jtschwar.github.io Public
Forked from orderedlist/minimalA Theme for GitHub Pages
JavaScript UpdatedMay 28, 2026 -
octopi Public
Forked from chanzuckerberg/octopiSearch for Protein 3D Coordinates in CryoET Tomograms
Python Other UpdatedMay 6, 2026 -
projection_refinement Public
A GPU and CPU accelerated python package for aligning tomography datasets.
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DeePiCtorch Public
pyTorch Implementation of DeePiCt
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tomo_TV Public
Cuda/C++ library for Regularized 2D and 3D Tomography Reconstructions.
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Multi-Modal-2D-Data-Fusion Public
Fuse multi-modal electron microscopy datasets using inverse problems
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astra-toolbox Public
Forked from astra-toolbox/astra-toolboxASTRA Tomography Toolbox for Custom Reconstruction Scripts
C++ GNU General Public License v3.0 UpdatedAug 7, 2025 -
3D-Atom-Segmentation Public
Package to use 3D UNets for Improving Atomic Resolution Electron Tomograms
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jonschwartz.github.io Public template
Forked from alshedivat/al-folioA beautiful, simple, clean, and responsive Jekyll theme for academics
HTML MIT License UpdatedMay 23, 2025 -
polnet Public
Forked from anmartinezs/polnetGenerates synthetic datasets for Cryo-Electron Tomography
Python Other UpdatedOct 9, 2024 -
cryoet-deepfinder Public
Forked from deep-finder/cryoet-deepfinderPersonal Adaptation of DeepFinder for CryoET
Python GNU General Public License v3.0 UpdatedAug 21, 2024 -
AreTomo2 Public
Forked from czimaginginstitute/AreTomo2C++ BSD 3-Clause "New" or "Revised" License UpdatedFeb 21, 2024 -
pytom-template-matching-gpu Public
Forked from SBC-Utrecht/pytom-match-pickOnly GPU template matching from the PyTOM toolbox - Used For CZI
Python GNU General Public License v2.0 UpdatedFeb 1, 2024 -
Segment_Volume Public
Python Jupyter-Notebook GUI for Segmenting Tomography Volumes
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DART_python Public
Forked from OhGreat/DART_pythonDART (Discrete Algebric Reconstruction Technique) iterative reconstruction algorithm for discrete tomography.
Python MIT License UpdatedNov 3, 2022 -
Attempt for the 2020 Smokey Mountain Data Challenge (https://smc-datachallenge.ornl.gov/challenge-2-2020/)
Python UpdatedJun 4, 2022 -
Implementations of deep learning models applied on super-resolution for Deep Learning for Computer Vision Project (EECS 598)
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Automated-Tomography Public
DM Script to Semi-Automate Tomography Experiments on S/TEM Microscopes.
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Removing-Stripe-Artifacts Public
Removing Scratches, Stripes, and Curtaining Artifacts in Micrographs
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prismatic Public
Forked from prism-em/prismaticC++/CUDA package for parallelized simulation of image formation in Scanning Transmission Electron Microscopy (STEM) using the PRISM and multislice algorithms
C++ GNU General Public License v3.0 UpdatedFeb 6, 2020 -
tomviz Public
Forked from OpenChemistry/tomvizCross platform, open source application for the processing, visualization, and analysis of 3D tomography data