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ENH: add interface for AFNI 3dTsmooth #2948

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Merged
effigies merged 5 commits into from
Sep 6, 2019
Merged

ENH: add interface for AFNI 3dTsmooth #2948

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11d3422
added simple version of 3dTsmooth
gpiantoni Jun 25, 2019
f341089
add all options for 3dTsmooth
gpiantoni Jun 26, 2019
0a05ce9
added autotest for TSmooth
gpiantoni Jun 26, 2019
8d76fd2
remove genfile from out_file of TSmooth and fix order of arguments in…
gpiantoni Sep 5, 2019
56e5715
added auto test for 3dTsmooth (without removing other files)
gpiantoni Sep 6, 2019
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added auto test for 3dTsmooth (without removing other files)
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@gpiantoni
gpiantoni committed Sep 6, 2019
commit 56e571532dc1470e63530d8a7e760db59d130ebd
10 changes: 7 additions & 3 deletions nipype/interfaces/afni/tests/test_auto_TSmooth.py
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Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,10 @@ def test_TSmooth_inputs():
adaptive=dict(argstr='-adaptive %d', ),
args=dict(argstr='%s', ),
blackman=dict(argstr='-blackman %d', ),
custom=dict(argstr='-custom %s', ),
custom=dict(
argstr='-custom %s',
extensions=None,
),
datum=dict(argstr='-datum %s', ),
environ=dict(
nohash=True,
Expand All @@ -18,6 +21,7 @@ def test_TSmooth_inputs():
in_file=dict(
argstr='%s',
copyfile=False,
extensions=None,
mandatory=True,
position=-1,
),
Expand All @@ -31,7 +35,7 @@ def test_TSmooth_inputs():
osf=dict(argstr='-osf', ),
out_file=dict(
argstr='-prefix %s',
genfile=True,
extensions=None,
name_source='in_file',
name_template='%s_smooth',
),
Expand All @@ -43,7 +47,7 @@ def test_TSmooth_inputs():
for metakey, value in list(metadata.items()):
assert getattr(inputs.traits()[key], metakey) == value
def test_TSmooth_outputs():
output_map = dict(out_file=dict(), )
output_map = dict(out_file=dict(extensions=None, ), )
outputs = TSmooth.output_spec()

for key, metadata in list(output_map.items()):
Expand Down