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FIX: ANTs' tools maintenance overhaul #3180

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Merged
oesteban merged 19 commits into from
Mar 9, 2020
Merged

FIX: ANTs' tools maintenance overhaul #3180

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909301e
fix #3178: improve the parsing of ``Atropos``
oesteban Feb 27, 2020
8165242
enh: add a few new utilities to ANTs
oesteban Feb 27, 2020
167f6c9
enh: update ants' interfaces API
oesteban Feb 27, 2020
417b889
sty: black
oesteban Feb 27, 2020
1c5045d
enh,sty: update antsJointFusion + black et al.
oesteban Feb 27, 2020
9e7c997
fix: ``make specs``
oesteban Feb 28, 2020
dfe8501
tst: reduce some complexity and increase coverage
oesteban Feb 28, 2020
dffcb78
fix: copy header for ResampleImageBySpacing
oesteban Feb 28, 2020
cf48cbd
Apply suggestions from code review
oesteban Mar 3, 2020
051c1e5
fix(compat): ensure nibabel < 3 compatiblity of tests
oesteban Mar 4, 2020
774f41d
fix: use ``aggregate_outputs`` instead of ``_list_outputs``
oesteban Mar 4, 2020
0544124
enh: remove ``aggregate_outputs`` duplications, fix InputMultiPath
oesteban Mar 4, 2020
f88add4
fix: roll back under-i/o specs
oesteban Mar 4, 2020
6979cbd
RF: Move header copying to a mixin
effigies Mar 4, 2020
d50c185
STY: black
effigies Mar 4, 2020
545a5fe
MNT: make specs
effigies Mar 4, 2020
292e2e8
Merge pull request #10 from effigies/enh/ants-utils-overhaul
oesteban Mar 4, 2020
135d900
sty: fix unused import
oesteban Mar 5, 2020
4e1d601
fix: consider that some outputs might not be defined
oesteban Mar 8, 2020
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fix: consider that some outputs might not be defined
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@oesteban
oesteban committed Mar 8, 2020
commit 4e1d601e0c52187340bcc07bc8651376d3c31533
4 changes: 3 additions & 1 deletion nipype/interfaces/mixins/fixheader.py
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Original file line number Diff line number Diff line change
Expand Up @@ -125,7 +125,9 @@ def _post_run_hook(self, runtime):

inputs = self.inputs.get_traitsfree()
outputs = self.aggregate_outputs(runtime=runtime).get_traitsfree()
for out, inp in self._copy_header_map.items():
defined_outputs = set(outputs.keys()).intersection(self._copy_header_map.keys())
for out in defined_outputs:
inp = self._copy_header_map[out]
keep_dtype = True
if isinstance(inp, tuple):
inp, keep_dtype = inp
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