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FIX: Update ApplyVDM to handle 4D inputs #3500

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Merged
merged 3 commits into from
Sep 5, 2022
Merged

FIX: Update ApplyVDM to handle 4D inputs #3500

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f0da0c7
extend apply VDM functionality to imaging data containing multiple fr…
Aug 29, 2022
adea98e
undone some changes that were not needed
Sep 1, 2022
970ea4f
Revert style changes
effigies Sep 5, 2022
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6 changes: 5 additions & 1 deletion nipype/interfaces/spm/preprocess.py
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Original file line number Diff line number Diff line change
Expand Up @@ -337,7 +337,11 @@ class ApplyVDM(SPMCommand):
def _format_arg(self, opt, spec, val):
"""Convert input to appropriate format for spm"""

if opt in ["in_files", "vdmfile"]:
if opt == 'in_files':
return scans_for_fnames(
ensure_list(val), keep4d=False, separate_sessions=False
)
if opt == 'vdmfile':
return scans_for_fname(ensure_list(val))
return super(ApplyVDM, self)._format_arg(opt, spec, val)

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