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9cd3115
WIP: open new workflows group in dmri (preprocess)
oesteban Aug 29, 2014
796f4c1
Merge branch 'bug/AddIPythonLexer' into enh/NewEPIArtifactCorrections
oesteban Aug 29, 2014
c064705
enh:included eddy_correction
oesteban Aug 29, 2014
4a372e2
removed hardcoded tests
oesteban Aug 29, 2014
14dd4b3
Merge branch 'master' into enh/NewEPIArtifactCorrections
oesteban Aug 30, 2014
f45ce74
enh:implementing new fmb workflow
oesteban Aug 30, 2014
576feff
add preprocessing utils
oesteban Aug 30, 2014
aea5ee8
enh:new fmb_sdc workflow
oesteban Aug 30, 2014
41d0f19
enh:new fmb_sdc workflow
oesteban Aug 30, 2014
b9f1c25
fix:doctests of new workflows
oesteban Aug 31, 2014
0ad0736
enh:new all-corrections workflows and example
oesteban Sep 1, 2014
3efd884
multiple fixes and new features
oesteban Sep 1, 2014
cd016f8
Merge branch 'master' into enh/NewEPIArtifactCorrections
oesteban Sep 1, 2014
1c3d77f
Merge branch 'master' into enh/NewEPIArtifactCorrections
oesteban Sep 1, 2014
f9e794a
updating dmri preprocess example
oesteban Sep 2, 2014
91b7880
Merge branch 'enh/N4-output-bias' into enh/NewEPIArtifactCorrections
oesteban Sep 2, 2014
55457a2
ENH: new artifact correction workflow on fsl
oesteban Sep 2, 2014
dfa8346
Merge branch 'master' into enh/NewEPIArtifactCorrections
oesteban Sep 2, 2014
eedcfcc
enh:new all_fmb_pipeline with just 1 interpolation
oesteban Sep 2, 2014
3f4082c
all_fmb_pipeline now accepts parameters
oesteban Sep 3, 2014
3b6961d
added missing connection in remove_bias
oesteban Sep 3, 2014
3874713
histogram equalization before hmc
oesteban Sep 3, 2014
e6760fc
removed redundant code in registrations
oesteban Sep 3, 2014
b9b122f
fix missing node
oesteban Sep 3, 2014
0ff79f2
Merge branch 'master' into enh/NewEPIArtifactCorrections
oesteban Sep 3, 2014
45aac9a
fixed inconsistency connecting ecc
oesteban Sep 3, 2014
32577f2
fixed inconsistency connecting ecc
oesteban Sep 3, 2014
cf912a5
all_peb_pipeline with only one interpolation
oesteban Sep 4, 2014
9c98d0c
fixed:hmc should not perform registration of ref volume
oesteban Sep 4, 2014
924cd45
tunning hmc registration
oesteban Sep 4, 2014
aa34523
Merge branch 'master' into enh/NewEPIArtifactCorrections
oesteban Sep 4, 2014
b76c0e5
add bgvalue new argument
oesteban Sep 4, 2014
2fa95f0
added schedules for FLIRT
oesteban Sep 5, 2014
5f7feb6
remove my signature everywhere
oesteban Sep 6, 2014
805815d
back to old naming convention
oesteban Sep 6, 2014
326ea89
some leftovers changing names-convention
oesteban Sep 6, 2014
a6acd1c
remove preprocess directory
oesteban Sep 6, 2014
36a7f05
doctests: some fixed some added
oesteban Sep 6, 2014
a166a76
fixed docstrings, added doctests
oesteban Sep 6, 2014
f1e26c9
add nosearch to FLIRT in hmc
oesteban Sep 6, 2014
541b6aa
fix bug (typo in argument name)
oesteban Sep 6, 2014
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back to old naming convention
  • Loading branch information
oesteban committed Sep 6, 2014
commit 805815d7d65634fde737ca57f4b91ee911d7eeb1
2 changes: 1 addition & 1 deletion examples/dmri_preprocessing.py
Original file line number Diff line number Diff line change
Expand Up @@ -41,7 +41,7 @@
that is *A>>>P* or *-y* (in RAS systems).
"""

from nipype.workflows.dmri.preprocess.epi import all_fsl_pipeline, remove_bias
from nipype.workflows.dmri.fsl.artifacts import all_fsl_pipeline, remove_bias

"""
Map field names into individual subject runs
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4 changes: 4 additions & 0 deletions nipype/workflows/dmri/fsl/__init__.py
Original file line number Diff line number Diff line change
@@ -1,5 +1,9 @@
from dti import create_bedpostx_pipeline

from artifacts import (all_fmb_pipeline, all_peb_pipeline, all_fsl_pipeline,
hmc_pipeline, ecc_pipeline, sdc_fmb, sdc_peb,
remove_bias)

from epi import (fieldmap_correction, topup_correction,
create_eddy_correct_pipeline,
create_epidewarp_pipeline, create_dmri_preprocessing)
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