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    510 repositories

    • prime-reportstream

      Public
      ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.
      fhirpublic-healthcivic-techhl7
      Kotlin
      •
      Creative Commons Zero v1.0 Universal
      •44•82•1.2k•107•Updated Dec 11, 2025Dec 11, 2025

    • covid19-forecast-hub

      Public
      A repository run by the US CDC to collect forecasts of incident COVID-19 hospital admissions and emergency department visits.
      R
      •
      Apache License 2.0
      •28•20•17•2•Updated Dec 11, 2025Dec 11, 2025

    • rsv-forecast-hub

      Public
      A repository run by the Centers for Disease Control and Prevention (CDC) to collect forecasts of incident respiratory syncytial virus (RSV) hospital admissions and emergency department visits.
      forecastinghubverserespiratory-syncytial-viruscenters-for-disease-control-and-preventioncenter-for-forecasting-and-outbreak-analytics
      Apache License 2.0
      •6•5•3•2•Updated Dec 11, 2025Dec 11, 2025

    • cdc-open-viz

      Public
      CDC OpenViz is a library of React packages for data visualization.
      reactvisualizationdatavisualization-library
      TypeScript
      •
      Apache License 2.0
      •30•46•0•5•Updated Dec 11, 2025Dec 11, 2025

    • phylophoenix

      Public
      🔥🌿🐦🔥PhyloPHoeNIx: Pipeline for relatedness determination using PHoeNIx output.
      Python
      •
      Apache License 2.0
      •0•9•4•1•Updated Dec 11, 2025Dec 11, 2025

    • phoenix

      Public
      🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens
      Python
      •
      Apache License 2.0
      •35•87•12•0•Updated Dec 11, 2025Dec 11, 2025

    • dibbs-ecr-refiner

      Public
      The DIBBs eCR Refiner reduces eICR and RR files down to only the most useful, necessary information to alleviate performance and storage burden on eCR data pipelines and disease surveillance systems and bring focus to pertinent data for a given reportable condition.
      XSLT
      •
      Apache License 2.0
      •3•4•58•5•Updated Dec 11, 2025Dec 11, 2025

    • stimulant_opioid_algorithm_medical_codes_R

      Public
      HTML
      •
      Apache License 2.0
      •3•4•0•0•Updated Dec 10, 2025Dec 10, 2025

    • eMKF

      Public
      SAS
      •
      Apache License 2.0
      •4•4•0•0•Updated Dec 10, 2025Dec 10, 2025

    • Opioid_SUD_MHI_MedCodes

      Public
      Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data
      Python
      •7•7•0•0•Updated Dec 10, 2025Dec 10, 2025

    • pyrenew-hew

      Public
      Models and infrastructure for forecasting respiratory disease hospitalizations using wastewater data with PyRenew.
      Python
      •
      Apache License 2.0
      •3•16•55•5•Updated Dec 10, 2025Dec 10, 2025

    • cfa-cloudops

      Public
      Python
      •
      Apache License 2.0
      •1•2•4•2•Updated Dec 10, 2025Dec 10, 2025

    • dibbs-ecr-viewer

      Public
      DIBBS eCR Viewer
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •2•12•117•11•Updated Dec 10, 2025Dec 10, 2025

    • cfa-epimodel

      Public
      R
      •
      Apache License 2.0
      •2•1•3•1•Updated Dec 10, 2025Dec 10, 2025

    • nccdphp-drh-mmria

      Public
      C#
      •
      GNU General Public License v3.0
      •0•2•0•2•Updated Dec 10, 2025Dec 10, 2025

    • hubhelpr

      Public
      R package providing helper functions for CDC forecast hub maintenance and report generation.
      rinfluenzacdccovid-19rsvhubverse
      R
      •
      Apache License 2.0
      •0•3•13•1•Updated Dec 10, 2025Dec 10, 2025

    • ixa

      Public
      Rust
      •
      Apache License 2.0
      •6•19•60•5•Updated Dec 10, 2025Dec 10, 2025

    • dibbs-text-to-code

      Public
      Python
      •
      Apache License 2.0
      •0•1•44•3•Updated Dec 10, 2025Dec 10, 2025

    • sg-monitoring-report

      Public
      Code used for the Surveillance Group monitoring report.
      JavaScript
      •
      Apache License 2.0
      •0•0•10•0•Updated Dec 10, 2025Dec 10, 2025

    • terraform-aws-dibbs-ecr-viewer

      Public
      HCL
      •
      Apache License 2.0
      •3•3•2•1•Updated Dec 10, 2025Dec 10, 2025

    • mira-oxide

      Public
      Rust
      •
      Apache License 2.0
      •1•5•0•2•Updated Dec 10, 2025Dec 10, 2025

    • cfa-epinow2-pipeline

      Public
      R
      •
      Apache License 2.0
      •6•12•44•9•Updated Dec 10, 2025Dec 10, 2025

    • MicrobeTrace

      Public
      The Visualization Multitool for Molecular Epidemiology and Bioinformatics
      bioinformaticsgenomicsphylogenetic-treesphylogeneticsepidemiologynetwork-visualizationhivcdcphylogenomicsphylogeny
      TypeScript
      •44•95•74•6•Updated Dec 10, 2025Dec 10, 2025

    • prime-simplereport

      Public
      SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.
      graphqlspring-bootreactjsterraform
      Java
      •
      Creative Commons Zero v1.0 Universal
      •63•61•161•20•Updated Dec 10, 2025Dec 10, 2025

    • cfa-dataops

      Public
      Python
      •
      Apache License 2.0
      •1•3•4•1•Updated Dec 10, 2025Dec 10, 2025

    • wastewater-informed-covid-forecasting

      Public
      Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
      R
      •
      Apache License 2.0
      •14•49•66•0•Updated Dec 10, 2025Dec 10, 2025

    • MycoID

      Public
      Nextflow
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 10, 2025Dec 10, 2025

    • cfa-catalog-pub

      Public
      Python
      •
      Apache License 2.0
      •0•0•5•2•Updated Dec 10, 2025Dec 10, 2025

    • survpopdata

      Public
      Apache License 2.0
      •0•0•6•1•Updated Dec 10, 2025Dec 10, 2025

    • ixa-epi-isolation

      Public
      Rust
      •
      Apache License 2.0
      •2•1•36•4•Updated Dec 9, 2025Dec 9, 2025