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    49 repositories

    • fjadra

      Public
      Library for simulating physical forces on particles, heavily inspired by d3-force.
      Rust
      •
      Apache License 2.0
      •2•0•0•0•Updated Dec 30, 2024Dec 30, 2024

    • pyciemss

      Public
      Causal and probabilistic reasoning with continuous time dynamical systems
      Python
      •
      Other
      •9•0•0•0•Updated Apr 13, 2024Apr 13, 2024

    • HyperNetX

      Public
      Python package for hypergraph analysis and visualization.
      Python
      •
      Other
      •106•0•0•0•Updated Dec 16, 2023Dec 16, 2023

    • visual-pde

      Public
      Interactive partial differential equation solver, live in your device's web browser
      JavaScript
      •
      Other
      •12•0•0•0•Updated Apr 3, 2023Apr 3, 2023

    • ARCADE

      Public
      ARCADE Biological Modeling Framework
      Java
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Aug 12, 2022Aug 12, 2022

    • NCI-DOE-Collab-Pilot2-MuMMI

      Public
      Multiscale Machine-learned Modeling Infrastructure (MuMMI) is a methodology that the Pilot 2 team has developed to study the interaction of active KRAS with the plasma membrane (and related phenomena) on very large temporal and spatial scales.
      2•0•0•0•Updated Jan 3, 2022Jan 3, 2022

    • rid-kit

      Public
      Reinforced dynamics
      Python
      •
      GNU Lesser General Public License v3.0
      •25•0•0•0•Updated Sep 6, 2021Sep 6, 2021

    • mechsearch

      Public
      Python
      •
      Other
      •1•0•0•0•Updated Aug 6, 2021Aug 6, 2021

    • deepmd-kit

      Public
      A deep learning package for many-body potential energy representation and molecular dynamics
      C++
      •
      GNU Lesser General Public License v3.0
      •580•0•0•0•Updated May 22, 2021May 22, 2021

    • sundials

      Public
      SUNDIALS is a SUite of Nonlinear and DIfferential/ALgebraic equation Solvers. This is a mirror of current releases, and development will move here eventually. Pull requests are welcome for bug fixes and minor changes.
      C
      •
      BSD 3-Clause "New" or "Revised" License
      •159•0•0•0•Updated Feb 1, 2021Feb 1, 2021

    • ndlib

      Public
      Network Diffusion Library - (for NetworkX and iGraph)
      Python
      •
      BSD 2-Clause "Simplified" License
      •81•0•0•0•Updated Oct 5, 2020Oct 5, 2020

    • snap

      Public
      Stanford Network Analysis Platform (SNAP) is a general purpose network analysis and graph mining library.
      C++
      •
      Other
      •807•0•0•0•Updated Sep 29, 2020Sep 29, 2020

    • BayesianDifferentiableProgramming

      Public
      Python
      •7•0•0•0•Updated Sep 28, 2020Sep 28, 2020

    • universal_differential_equations

      Public
      Repository for the Universal Differential Equations for Scientific Machine Learning paper, describing a computational basis for high performance SciML
      Julia
      •60•0•0•0•Updated Aug 26, 2020Aug 26, 2020

    • GLN

      Public
      Jupyter Notebook
      •2•0•0•0•Updated Jul 26, 2020Jul 26, 2020

    • lammps-sys

      Public
      Rust bindgen wrapper (and static lib builder) for LAMMPS
      Rust
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Jun 5, 2020Jun 5, 2020

    • networkx

      Public
      Official NetworkX source code repository.
      Python
      •
      Other
      •3.4k•0•0•0•Updated Apr 29, 2020Apr 29, 2020

    • taichi

      Public
      Productive programming language for portable, high-performance, sparse & differentiable computing
      C++
      •
      MIT License
      •2.4k•0•0•0•Updated Mar 23, 2020Mar 23, 2020

    • diffeq

      Public
      Basic Ordinary Differential Equation solvers
      Rust
      •
      Apache License 2.0
      •3•0•0•0•Updated Mar 16, 2020Mar 16, 2020

    • network_diffusion

      Public
      Python
      •
      MIT License
      •5•0•0•0•Updated Mar 15, 2020Mar 15, 2020

    • pakman

      Public
      A modular, efficient and portable tool for running parallel approximate Bayesian computation algorithms.
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Mar 7, 2020Mar 7, 2020

    • PINNs

      Public
      Physics Informed Deep Learning: Data-driven Solutions and Discovery of Nonlinear Partial Differential Equations
      Python
      •
      MIT License
      •1.5k•0•0•0•Updated Mar 5, 2020Mar 5, 2020

    • eqnfree

      Public
      In this repository, I am working on a framework that contains various methods from equation-free modeling, especially bifurcation analysis and projective integration.
      Python
      •
      MIT License
      •1•0•0•0•Updated Dec 9, 2019Dec 9, 2019

    • SindyAutoencoders

      Public
      Python
      •
      MIT License
      •110•0•0•0•Updated Oct 10, 2019Oct 10, 2019

    • R-Network-Visualization-Workshop

      Public
      Static and dynamic network visualization with R - code and tutorial from Polnet 2016 workshop.
      HTML
      •150•0•0•0•Updated Aug 7, 2019Aug 7, 2019

    • vde

      Public
      Variational Autoencoder for Dimensionality Reduction of Time-Series
      Jupyter Notebook
      •
      MIT License
      •42•0•0•0•Updated Jul 29, 2019Jul 29, 2019

    • readdy_learn

      Public
      learn reactions from data
      Jupyter Notebook
      •
      GNU Lesser General Public License v3.0
      •3•0•0•0•Updated Dec 11, 2018Dec 11, 2018

    • MachineLearning

      Public
      Machine learning resources
      976•0•0•0•Updated Jun 23, 2018Jun 23, 2018

    • MachineLearning_Python

      Public
      机器学习算法python实现
      Python
      •
      MIT License
      •2.5k•0•0•0•Updated May 16, 2018May 16, 2018

    • awesome-network-analysis

      Public
      A curated list of awesome network analysis resources.
      R
      •629•0•0•0•Updated May 9, 2018May 9, 2018