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bugfix #9

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Merged
merged 7 commits into from
Jun 19, 2020
Merged

bugfix #9

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3e3692c
included recursive clone of git repo
massiddamt May 6, 2019
05b8a6c
included diva pipeline
massiddamt May 6, 2019
99325d5
included pipelines from solida-core hub
massiddamt Jun 18, 2019
d51ebb1
patients.tsv replacement was present twice: removed one
massiddamt Jun 18, 2019
7f4dfc7
fix dependencies issues
massiddamt Jun 19, 2020
64395d4
Merge branch 'master' into master
massiddamt Jun 19, 2020
330d486
Merge branch 'master' into master
gmauro Jun 19, 2020
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patients.tsv replacement was present twice: removed one
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@massiddamt
massiddamt committed Jun 18, 2019
commit d51ebb1a97e8834366243d2d841fbc623645adaf
7 changes: 0 additions & 7 deletions solida/playbooks/replace_paths.yaml
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Expand Up @@ -35,13 +35,6 @@
replace: "{{ pipeline_dir }}/patients.tsv"
ignore_errors: yes

- name: Replace path to patients.tsv into the project configuration file
replace:
dest: "{{ pipeline_dir }}/{{ project_config_file }}"
regexp: "patients.tsv"
replace: "{{ pipeline_dir }}/patients.tsv"
ignore_errors: yes

- name: Replace path_to_references_data into the project configuration file
replace:
dest: "{{ pipeline_dir }}/{{ project_config_file }}"
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